FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7576, 284 aa 1>>>pF1KB7576 284 - 284 aa - 284 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.2991+/-0.000853; mu= 2.0351+/- 0.052 mean_var=332.5872+/-67.222, 0's: 0 Z-trim(118.5): 140 B-trim: 0 in 0/53 Lambda= 0.070327 statistics sampled from 19261 (19417) to 19261 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.845), E-opt: 0.2 (0.596), width: 16 Scan time: 3.120 The best scores are: opt bits E(32554) CCDS8214.1 PHOX2A gene_id:401|Hs108|chr11 ( 284) 1976 212.8 2.2e-55 CCDS3463.1 PHOX2B gene_id:8929|Hs108|chr4 ( 314) 948 108.6 6e-24 >>CCDS8214.1 PHOX2A gene_id:401|Hs108|chr11 (284 aa) initn: 1976 init1: 1976 opt: 1976 Z-score: 1107.6 bits: 212.8 E(32554): 2.2e-55 Smith-Waterman score: 1976; 100.0% identity (100.0% similar) in 284 aa overlap (1-284:1-284) 10 20 30 40 50 60 pF1KB7 MDYSYLNSYDSCVAAMEASAYGDFGACSQPGGFQYSPLRPAFPAAGPPCPALGSSNCALG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 MDYSYLNSYDSCVAAMEASAYGDFGACSQPGGFQYSPLRPAFPAAGPPCPALGSSNCALG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 ALRDHQPAPYSAVPYKFFPEPSGLHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 ALRDHQPAPYSAVPYKFFPEPSGLHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 EELALKIDLTEARVQVWFQNRRAKFRKQERAASAKGAAGAAGAKKGEARCSSEDDDSKES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 EELALKIDLTEARVQVWFQNRRAKFRKQERAASAKGAAGAAGAKKGEARCSSEDDDSKES 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB7 TCSPTPDSTASLPPPPAPGLASPRLSPSPLPVALGSGPGPGPGPQPLKGALWAGVAGGGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 TCSPTPDSTASLPPPPAPGLASPRLSPSPLPVALGSGPGPGPGPQPLKGALWAGVAGGGG 190 200 210 220 230 240 250 260 270 280 pF1KB7 GGPGAGAAELLKAWQPAESGPGPFSGVLSSFHRKPGPALKTNLF :::::::::::::::::::::::::::::::::::::::::::: CCDS82 GGPGAGAAELLKAWQPAESGPGPFSGVLSSFHRKPGPALKTNLF 250 260 270 280 >>CCDS3463.1 PHOX2B gene_id:8929|Hs108|chr4 (314 aa) initn: 917 init1: 684 opt: 948 Z-score: 543.4 bits: 108.6 E(32554): 6e-24 Smith-Waterman score: 963; 55.1% identity (72.0% similar) in 321 aa overlap (1-284:4-314) 10 20 30 40 50 pF1KB7 MDYSYLNS--YDSCVAAME----ASAYGDFGACSQPGGFQYSPLRPAFPAAGPPCPA :.:::::: :.::.:.:. ::::.::..::: .::::.:.: .: :.. ::. CCDS34 MYKMEYSYLNSSAYESCMAGMDTSSLASAYADFSSCSQASGFQYNPIRTTFGATSG-CPS 10 20 30 40 50 60 70 80 90 100 110 pF1KB7 LGSSNCALGALRDHQPAPYSAVPYKFFPEPSGLHEKRKQRRIRTTFTSAQLKELERVFAE : ..:.::.::::: .::.:::::.: . .::.:::::::::::::::::::::::::: CCDS34 LTPGSCSLGTLRDHQSSPYAAVPYKLFTDHGGLNEKRKQRRIRTTFTSAQLKELERVFAE 60 70 80 90 100 110 120 130 140 150 160 170 pF1KB7 THYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQERAASAKGAAGAAGAKKGEARCS :::::::::::::::::::::::::::::::::::::::::.: .::. :.. :. : CCDS34 THYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQERAAAAAAAAAKNGSS-GKKSDS 120 130 140 150 160 170 180 190 200 210 220 pF1KB7 SEDDDSKESTCSPTPDSTASLPPPPAPGLASPRLS--------PSPLPVALGSGPGPGPG :.::.:::. : ::::.. : : : .: . ::: . ..::: ::: CCDS34 SRDDESKEAK-STDPDSTGGPGPNPNP---TPSCGANGGGGGGPSPAGAPGAAGPG-GPG 180 190 200 210 220 230 230 240 250 260 pF1KB7 PQPLKG------------ALWAGVAGGGG----GGPGAGAAELLKAWQPAESGP----GP .: :: : :..:..:: :::: : : . : : : :: CCDS34 GEPGKGGAAAAAAAAAAAAAAAAAAAAGGLAAAGGPGQGWAP---GPGPITSIPDSLGGP 240 250 260 270 280 290 270 280 pF1KB7 FSGVLSSFHRKPGP--AL-KTNLF :..::::..: : :: :...: CCDS34 FASVLSSLQRPNGAKAALVKSSMF 300 310 284 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:41:51 2016 done: Mon Nov 7 23:41:52 2016 Total Scan time: 3.120 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]