FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3117, 291 aa 1>>>pF1KE3117 291 - 291 aa - 291 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9563+/-0.000703; mu= 16.9483+/- 0.042 mean_var=61.9694+/-12.743, 0's: 0 Z-trim(109.4): 17 B-trim: 0 in 0/50 Lambda= 0.162924 statistics sampled from 10823 (10834) to 10823 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.711), E-opt: 0.2 (0.333), width: 16 Scan time: 2.680 The best scores are: opt bits E(32554) CCDS44668.1 LRTOMT gene_id:220074|Hs108|chr11 ( 291) 1965 470.1 8.6e-133 CCDS13770.1 COMT gene_id:1312|Hs108|chr22 ( 271) 568 141.7 5.7e-34 CCDS46663.1 COMT gene_id:1312|Hs108|chr22 ( 221) 542 135.5 3.4e-32 >>CCDS44668.1 LRTOMT gene_id:220074|Hs108|chr11 (291 aa) initn: 1965 init1: 1965 opt: 1965 Z-score: 2497.5 bits: 470.1 E(32554): 8.6e-133 Smith-Waterman score: 1965; 100.0% identity (100.0% similar) in 291 aa overlap (1-291:1-291) 10 20 30 40 50 60 pF1KE3 MGTPWRKRKGIAGPGLPDLSCALVLQPRAQVGTMSPAIALAFLPLVVTLLVRYRHYFRLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 MGTPWRKRKGIAGPGLPDLSCALVLQPRAQVGTMSPAIALAFLPLVVTLLVRYRHYFRLL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 VRTVLLRSLRDCLSGLRIEERAFSYVLTHALPGDPGHILTTLDHWSSRCEYLSHMGPVKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 VRTVLLRSLRDCLSGLRIEERAFSYVLTHALPGDPGHILTTLDHWSSRCEYLSHMGPVKG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 QILMRLVEEKAPACVLELGTYCGYSTLLIARALPPGGRLLTVERDPRTAAVAEKLIRLAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 QILMRLVEEKAPACVLELGTYCGYSTLLIARALPPGGRLLTVERDPRTAAVAEKLIRLAG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 FDEHMVELIVGSSEDVIPCLRTQYQLSRADLVLLAHRPRCYLRDLQLLEAHALLPAGATV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 FDEHMVELIVGSSEDVIPCLRTQYQLSRADLVLLAHRPRCYLRDLQLLEAHALLPAGATV 190 200 210 220 230 240 250 260 270 280 290 pF1KE3 LADHVLFPGAPRFLQYAKSCGRYRCRLHHTGLPDFPAIKDGIAQLTYAGPG ::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 LADHVLFPGAPRFLQYAKSCGRYRCRLHHTGLPDFPAIKDGIAQLTYAGPG 250 260 270 280 290 >>CCDS13770.1 COMT gene_id:1312|Hs108|chr22 (271 aa) initn: 530 init1: 276 opt: 568 Z-score: 723.3 bits: 141.7 E(32554): 5.7e-34 Smith-Waterman score: 568; 36.3% identity (67.2% similar) in 259 aa overlap (37-291:10-266) 10 20 30 40 50 60 pF1KE3 KRKGIAGPGLPDLSCALVLQPRAQVGTMSPAIALAFLPLVVTLLVRYRHYFRLLV----R : .: : :.:.::. ::. : CCDS13 MPEAPPLLLAAVLLGLVLLVVLLLLLRHWGWGLCLIGWN 10 20 30 70 80 90 100 110 120 pF1KE3 TVLLRSLRDCLSGLRIEERAFSYVLTHALPGDPGHILTTLDHWSSRCEYLSHMGPVKGQI .:. ... : : :.: ...:: :: ::. .: ..: . . :. ..: ::.: CCDS13 EFILQPIHNLLMGDTKEQRILNHVLQHAEPGNAQSVLEAIDTYCEQKEWAMNVGDKKGKI 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE3 LMRLVEEKAPACVLELGTYCGYSTLLIARALPPGGRLLTVERDPRTAAVAEKLIRLAGFD . ...:. :. .::::.:::::.. .:: : ::.::.:.: .: ::...... .:: CCDS13 VDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVK 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE3 EHMVELIVGSSEDVIPCLRTQYQLSRADLVLLAHRPRCYLRDLQLLEAHALLPAGATVLA .. : :.::.:.:.:: :. .:... :.:.: : :: : ::: .:: :...:: CCDS13 DK-VTLVVGASQDIIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLA 160 170 180 190 200 210 250 260 270 280 290 pF1KE3 DHVLFPGAPRFLQYAKSCGRYRCRLHHTGLPDFPAIKDGIAQLTYAGPG :.:. :::: :: .... . ..: :. .. .. . ::. . : ::: CCDS13 DNVICPGAPDFLAHVRGSSCFECT-HYQSFLEYREVVDGLEKAIYKGPGSEAGP 220 230 240 250 260 270 >>CCDS46663.1 COMT gene_id:1312|Hs108|chr22 (221 aa) initn: 530 init1: 276 opt: 542 Z-score: 691.6 bits: 135.5 E(32554): 3.4e-32 Smith-Waterman score: 542; 38.0% identity (70.9% similar) in 213 aa overlap (79-291:6-216) 50 60 70 80 90 100 pF1KE3 LLVRYRHYFRLLVRTVLLRSLRDCLSGLRIEERAFSYVLTHALPGDPGHILTTLDHWSSR :.: ...:: :: ::. .: ..: . . CCDS46 MGDTKEQRILNHVLQHAEPGNAQSVLEAIDTYCEQ 10 20 30 110 120 130 140 150 160 pF1KE3 CEYLSHMGPVKGQILMRLVEEKAPACVLELGTYCGYSTLLIARALPPGGRLLTVERDPRT :. ..: ::.:. ...:. :. .::::.:::::.. .:: : ::.::.:.: .: CCDS46 KEWAMNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDC 40 50 60 70 80 90 170 180 190 200 210 220 pF1KE3 AAVAEKLIRLAGFDEHMVELIVGSSEDVIPCLRTQYQLSRADLVLLAHRPRCYLRDLQLL ::...... .:: .. : :.::.:.:.:: :. .:... :.:.: : :: : :: CCDS46 AAITQRMVDFAGVKDK-VTLVVGASQDIIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLL 100 110 120 130 140 150 230 240 250 260 270 280 pF1KE3 EAHALLPAGATVLADHVLFPGAPRFLQYAKSCGRYRCRLHHTGLPDFPAIKDGIAQLTYA : .:: :...:::.:. :::: :: .... . ..: :. .. .. . ::. . : CCDS46 EECGLLRKGTVLLADNVICPGAPDFLAHVRGSSCFECT-HYQSFLEYREVVDGLEKAIYK 160 170 180 190 200 210 290 pF1KE3 GPG ::: CCDS46 GPGSEAGP 220 291 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 05:32:23 2016 done: Sun Nov 6 05:32:24 2016 Total Scan time: 2.680 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]