FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1681, 194 aa
  1>>>pF1KE1681 194 - 194 aa - 194 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4951+/-0.000572; mu= 13.4379+/- 0.035
 mean_var=76.2304+/-15.167, 0's: 0 Z-trim(114.3): 20  B-trim: 59 in 1/51
 Lambda= 0.146896
 statistics sampled from 14889 (14904) to 14889 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.8), E-opt: 0.2 (0.458), width:  16
 Scan time:  2.280

The best scores are:                                      opt bits E(32554)
CCDS8206.2 IL18BP gene_id:10068|Hs108|chr11        ( 194) 1333 290.7 3.9e-79
CCDS44666.1 IL18BP gene_id:10068|Hs108|chr11       ( 115)  542 122.9 7.3e-29


>>CCDS8206.2 IL18BP gene_id:10068|Hs108|chr11             (194 aa)
 initn: 1333 init1: 1333 opt: 1333  Z-score: 1534.3  bits: 290.7 E(32554): 3.9e-79
Smith-Waterman score: 1333; 100.0% identity (100.0% similar) in 194 aa overlap (1-194:1-194)

               10        20        30        40        50        60
pF1KE1 MTMRHNWTPDLSPLWVLLLCAHVVTLLVRATPVSQTTTAATASVRSTKDPCPSQPPVFPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MTMRHNWTPDLSPLWVLLLCAHVVTLLVRATPVSQTTTAATASVRSTKDPCPSQPPVFPA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 AKQCPALEVTWPEVEVPLNGTLSLSCVACSRFPNFSILYWLGNGSFIEHLPGRLWEGSTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 AKQCPALEVTWPEVEVPLNGTLSLSCVACSRFPNFSILYWLGNGSFIEHLPGRLWEGSTS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 RERGSTGTQLCKALVLEQLTPALHSTNFSCVLVDPEQVVQRHVVLAQLWAGLRATLPPTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 RERGSTGTQLCKALVLEQLTPALHSTNFSCVLVDPEQVVQRHVVLAQLWAGLRATLPPTQ
              130       140       150       160       170       180

              190    
pF1KE1 EALPSSHSSPQQQG
       ::::::::::::::
CCDS82 EALPSSHSSPQQQG
              190    

>>CCDS44666.1 IL18BP gene_id:10068|Hs108|chr11            (115 aa)
 initn: 560 init1: 542 opt: 542  Z-score: 631.6  bits: 122.9 E(32554): 7.3e-29
Smith-Waterman score: 542; 98.7% identity (100.0% similar) in 79 aa overlap (1-79:1-79)

               10        20        30        40        50        60
pF1KE1 MTMRHNWTPDLSPLWVLLLCAHVVTLLVRATPVSQTTTAATASVRSTKDPCPSQPPVFPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MTMRHNWTPDLSPLWVLLLCAHVVTLLVRATPVSQTTTAATASVRSTKDPCPSQPPVFPA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 AKQCPALEVTWPEVEVPLNGTLSLSCVACSRFPNFSILYWLGNGSFIEHLPGRLWEGSTS
       ::::::::::::::::::.                                         
CCDS44 AKQCPALEVTWPEVEVPLSWAEGNLAPHPRSPALQPQQSTAAGLRLSTGPAAAQP     
               70        80        90       100       110          




194 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 15:06:22 2016 done: Sun Nov  6 15:06:23 2016
 Total Scan time:  2.280 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]