FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5772, 593 aa 1>>>pF1KE5772 593 - 593 aa - 593 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.9803+/-0.000377; mu= 15.7577+/- 0.023 mean_var=81.2021+/-16.603, 0's: 0 Z-trim(114.6): 48 B-trim: 739 in 1/49 Lambda= 0.142328 statistics sampled from 24507 (24551) to 24507 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.653), E-opt: 0.2 (0.288), width: 16 Scan time: 8.100 The best scores are: opt bits E(85289) NP_078925 (OMIM: 209900,209901) Bardet-Biedl syndr ( 593) 3849 800.3 0 >>NP_078925 (OMIM: 209900,209901) Bardet-Biedl syndrome (593 aa) initn: 3849 init1: 3849 opt: 3849 Z-score: 4271.2 bits: 800.3 E(85289): 0 Smith-Waterman score: 3849; 100.0% identity (100.0% similar) in 593 aa overlap (1-593:1-593) 10 20 30 40 50 60 pF1KE5 MAAASSSDSDACGAESNEANSKWLDAHYDPMANIHTFSACLALADLHGDGEYKLVVGDLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_078 MAAASSSDSDACGAESNEANSKWLDAHYDPMANIHTFSACLALADLHGDGEYKLVVGDLG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 PGGQQPRLKVLKGPLVMTESPLPALPAAAATFLMEQHEPRTPALALASGPCVYVYKNLRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_078 PGGQQPRLKVLKGPLVMTESPLPALPAAAATFLMEQHEPRTPALALASGPCVYVYKNLRP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 YFKFSLPQLPPNPLEQDLWNQAKEDRIDPLTLKEMLESIRETAEEPLSIQSLRFLQLELS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_078 YFKFSLPQLPPNPLEQDLWNQAKEDRIDPLTLKEMLESIRETAEEPLSIQSLRFLQLELS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 EMEAFVNQHKSNSIKRQTVITTMTTLKKNLADEDAVSCLVLGTENKELLVLDPEAFTILA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_078 EMEAFVNQHKSNSIKRQTVITTMTTLKKNLADEDAVSCLVLGTENKELLVLDPEAFTILA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 KMSLPSVPVFLEVSGQFDVEFRLAAACRNGNIYILRRDSKHPKYCIELSAQPVGLIRVHK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_078 KMSLPSVPVFLEVSGQFDVEFRLAAACRNGNIYILRRDSKHPKYCIELSAQPVGLIRVHK 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 VLVVGSTQDSLHGFTHKGKKLWTVQMPAAILTMNLLEQHSRGLQAVMAGLANGEVRIYRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_078 VLVVGSTQDSLHGFTHKGKKLWTVQMPAAILTMNLLEQHSRGLQAVMAGLANGEVRIYRD 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 KALLNVIHTPDAVTSLCFGRYGREDNTLIMTTRGGGLIIKILKRTAVFVEGGSEVGPPPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_078 KALLNVIHTPDAVTSLCFGRYGREDNTLIMTTRGGGLIIKILKRTAVFVEGGSEVGPPPA 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE5 QAMKLNVPRKTRLYVDQTLREREAGTAMHRAFQTDLYLLRLRAARAYLQALESSLSPLST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_078 QAMKLNVPRKTRLYVDQTLREREAGTAMHRAFQTDLYLLRLRAARAYLQALESSLSPLST 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE5 TAREPLKLHAVVQGLGPTFKLTLHLQNTSTTRPVLGLLVCFLYNEALYSLPRAFFKVPLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_078 TAREPLKLHAVVQGLGPTFKLTLHLQNTSTTRPVLGLLVCFLYNEALYSLPRAFFKVPLL 490 500 510 520 530 540 550 560 570 580 590 pF1KE5 VPGLNYPLETFVESLSNKGISDIIKVLVLREGQSAPLLSAHVNMPGSEGLAAA ::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_078 VPGLNYPLETFVESLSNKGISDIIKVLVLREGQSAPLLSAHVNMPGSEGLAAA 550 560 570 580 590 593 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 06:30:47 2016 done: Tue Nov 8 06:30:49 2016 Total Scan time: 8.100 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]