FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE9285, 246 aa 1>>>pF1KE9285 246 - 246 aa - 246 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.1070+/-0.000803; mu= 2.6545+/- 0.048 mean_var=166.2171+/-32.959, 0's: 0 Z-trim(113.8): 13 B-trim: 15 in 1/53 Lambda= 0.099480 statistics sampled from 14375 (14379) to 14375 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.776), E-opt: 0.2 (0.442), width: 16 Scan time: 1.850 The best scores are: opt bits E(32554) CCDS8135.1 BRMS1 gene_id:25855|Hs108|chr11 ( 246) 1618 243.3 1.1e-64 CCDS44654.1 BRMS1 gene_id:25855|Hs108|chr11 ( 290) 1600 240.8 7.6e-64 CCDS32066.1 BRMS1L gene_id:84312|Hs108|chr14 ( 323) 858 134.3 9.5e-32 >>CCDS8135.1 BRMS1 gene_id:25855|Hs108|chr11 (246 aa) initn: 1618 init1: 1618 opt: 1618 Z-score: 1274.7 bits: 243.3 E(32554): 1.1e-64 Smith-Waterman score: 1618; 100.0% identity (100.0% similar) in 246 aa overlap (1-246:1-246) 10 20 30 40 50 60 pF1KE9 MPVQPPSKDTEEMEAEGDSAAEMNGEEEESEEERSGSQTESEEESSEMDDEDYERRRSEC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 MPVQPPSKDTEEMEAEGDSAAEMNGEEEESEEERSGSQTESEEESSEMDDEDYERRRSEC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 VSEMLDLEKQFSELKEKLFRERLSQLRLRLEEVGAERAPEYTEPLGGLQRSLKIRIQVAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 VSEMLDLEKQFSELKEKLFRERLSQLRLRLEEVGAERAPEYTEPLGGLQRSLKIRIQVAG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 IYKGFCLDVIRNKYECELQGAKQHLESEKLLLYDTLQGELQERIQRLEEDRQSLDLSSEW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 IYKGFCLDVIRNKYECELQGAKQHLESEKLLLYDTLQGELQERIQRLEEDRQSLDLSSEW 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 WDDKLHARGSSRSWDSLPPSKRKKAPLVSGPYIVYMLQEIDILEDWTAIKKARAAVSPQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 WDDKLHARGSSRSWDSLPPSKRKKAPLVSGPYIVYMLQEIDILEDWTAIKKARAAVSPQK 190 200 210 220 230 240 pF1KE9 RKSDGP :::::: CCDS81 RKSDGP >>CCDS44654.1 BRMS1 gene_id:25855|Hs108|chr11 (290 aa) initn: 1600 init1: 1600 opt: 1600 Z-score: 1259.7 bits: 240.8 E(32554): 7.6e-64 Smith-Waterman score: 1600; 100.0% identity (100.0% similar) in 244 aa overlap (1-244:1-244) 10 20 30 40 50 60 pF1KE9 MPVQPPSKDTEEMEAEGDSAAEMNGEEEESEEERSGSQTESEEESSEMDDEDYERRRSEC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 MPVQPPSKDTEEMEAEGDSAAEMNGEEEESEEERSGSQTESEEESSEMDDEDYERRRSEC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 VSEMLDLEKQFSELKEKLFRERLSQLRLRLEEVGAERAPEYTEPLGGLQRSLKIRIQVAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 VSEMLDLEKQFSELKEKLFRERLSQLRLRLEEVGAERAPEYTEPLGGLQRSLKIRIQVAG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 IYKGFCLDVIRNKYECELQGAKQHLESEKLLLYDTLQGELQERIQRLEEDRQSLDLSSEW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 IYKGFCLDVIRNKYECELQGAKQHLESEKLLLYDTLQGELQERIQRLEEDRQSLDLSSEW 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 WDDKLHARGSSRSWDSLPPSKRKKAPLVSGPYIVYMLQEIDILEDWTAIKKARAAVSPQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 WDDKLHARGSSRSWDSLPPSKRKKAPLVSGPYIVYMLQEIDILEDWTAIKKARAAVSPQK 190 200 210 220 230 240 pF1KE9 RKSDGP :::: CCDS44 RKSDDRRTHRPLRVCPARLLWCCWALPLHLALAWTPPLPSSRPAQLWPWS 250 260 270 280 290 >>CCDS32066.1 BRMS1L gene_id:84312|Hs108|chr14 (323 aa) initn: 894 init1: 631 opt: 858 Z-score: 683.5 bits: 134.3 E(32554): 9.5e-32 Smith-Waterman score: 858; 53.2% identity (82.3% similar) in 248 aa overlap (1-246:1-244) 10 20 30 40 50 pF1KE9 MPVQP--PSKDTEEMEAEGDSAAEMNGEEEESEEERSGSQTESEEESSEMDDEDYERRRS :::. .:.:.. . . :: .: :.:. .:.: .: . .:::::::: :::: CCDS32 MPVHSRGDKKETNHHDEMEVDYAENEGSSSEDEDTESSSVSE-DGDSSEMDDEDCERRRM 10 20 30 40 50 60 70 80 90 100 110 pF1KE9 ECVSEMLDLEKQFSELKEKLFRERLSQLRLRLEEVGAERAPEYTEPLGGLQRSLKIRIQV ::..:: .:::::..::..:..:::::. .:.:: : .:::: :::. ::....:: .: CCDS32 ECLDEMSNLEKQFTDLKDQLYKERLSQVDAKLQEVIAGKAPEYLEPLATLQENMQIRTKV 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE9 AGIYKGFCLDVIRNKYECELQGAKQHLESEKLLLYDTLQGELQERIQRLEEDRQSLDLSS ::::. .::. ..::::::.:...:: ::::::::::.:.::.:.:.::::::.:.:..: CCDS32 AGIYRELCLESVKNKYECEIQASRQHCESEKLLLYDTVQSELEEKIRRLEEDRHSIDITS 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE9 EWWDDKLHARGSSRSWDSLPPSKRKKAPLVSGPYIVYMLQEIDILEDWTAIKKARAAVSP : :.:.:..: . . : . :.: :: .:::::::::::..:::::::.:.:: :...: CCDS32 ELWNDELQSRKKRK--DPFSPDK-KKPVVVSGPYIVYMLQDLDILEDWTTIRKAMATLGP 180 190 200 210 220 230 240 pF1KE9 QKRKSDGP .. :.. : CCDS32 HRVKTEPPVKLEKHLHSARSEEGRLYYDGEWYIRGQTICIDKKDECPTSAVITTINHDEV 240 250 260 270 280 290 246 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 10:20:18 2016 done: Tue Nov 8 10:20:19 2016 Total Scan time: 1.850 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]