FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0397, 89 aa
  1>>>pF1KE0397 89 - 89 aa - 89 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6214+/-0.000274; mu= 11.5289+/- 0.017
 mean_var=49.2393+/- 9.973, 0's: 0 Z-trim(118.8): 4  B-trim: 1757 in 1/48
 Lambda= 0.182776
 statistics sampled from 32113 (32117) to 32113 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.795), E-opt: 0.2 (0.377), width:  16
 Scan time:  4.200

The best scores are:                                      opt bits E(85289)
XP_016874004 (OMIM: 603811,614008) PREDICTED: barr (  89)  620 170.2   4e-43
XP_016874003 (OMIM: 603811,614008) PREDICTED: barr (  89)  620 170.2   4e-43
NP_001137457 (OMIM: 603811,614008) barrier-to-auto (  89)  620 170.2   4e-43
NP_003851 (OMIM: 603811,614008) barrier-to-autoint (  89)  620 170.2   4e-43


>>XP_016874004 (OMIM: 603811,614008) PREDICTED: barrier-  (89 aa)
 initn: 620 init1: 620 opt: 620  Z-score: 895.2  bits: 170.2 E(85289): 4e-43
Smith-Waterman score: 620; 100.0% identity (100.0% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KE0 MTTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MTTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR
               10        20        30        40        50        60

               70        80         
pF1KE0 EWLKDTCGANAKQSRDCFGCLREWCDAFL
       :::::::::::::::::::::::::::::
XP_016 EWLKDTCGANAKQSRDCFGCLREWCDAFL
               70        80         

>>XP_016874003 (OMIM: 603811,614008) PREDICTED: barrier-  (89 aa)
 initn: 620 init1: 620 opt: 620  Z-score: 895.2  bits: 170.2 E(85289): 4e-43
Smith-Waterman score: 620; 100.0% identity (100.0% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KE0 MTTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MTTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR
               10        20        30        40        50        60

               70        80         
pF1KE0 EWLKDTCGANAKQSRDCFGCLREWCDAFL
       :::::::::::::::::::::::::::::
XP_016 EWLKDTCGANAKQSRDCFGCLREWCDAFL
               70        80         

>>NP_001137457 (OMIM: 603811,614008) barrier-to-autointe  (89 aa)
 initn: 620 init1: 620 opt: 620  Z-score: 895.2  bits: 170.2 E(85289): 4e-43
Smith-Waterman score: 620; 100.0% identity (100.0% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KE0 MTTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR
               10        20        30        40        50        60

               70        80         
pF1KE0 EWLKDTCGANAKQSRDCFGCLREWCDAFL
       :::::::::::::::::::::::::::::
NP_001 EWLKDTCGANAKQSRDCFGCLREWCDAFL
               70        80         

>>NP_003851 (OMIM: 603811,614008) barrier-to-autointegra  (89 aa)
 initn: 620 init1: 620 opt: 620  Z-score: 895.2  bits: 170.2 E(85289): 4e-43
Smith-Waterman score: 620; 100.0% identity (100.0% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KE0 MTTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MTTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR
               10        20        30        40        50        60

               70        80         
pF1KE0 EWLKDTCGANAKQSRDCFGCLREWCDAFL
       :::::::::::::::::::::::::::::
NP_003 EWLKDTCGANAKQSRDCFGCLREWCDAFL
               70        80         




89 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 15:09:37 2016 done: Sun Nov  6 15:09:37 2016
 Total Scan time:  4.200 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]