FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE0397, 89 aa 1>>>pF1KE0397 89 - 89 aa - 89 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.4153+/-0.000536; mu= 12.7895+/- 0.032 mean_var=49.8207+/- 9.864, 0's: 0 Z-trim(112.4): 5 B-trim: 0 in 0/50 Lambda= 0.181706 statistics sampled from 13155 (13158) to 13155 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.809), E-opt: 0.2 (0.404), width: 16 Scan time: 1.480 The best scores are: opt bits E(32554) CCDS8125.1 BANF1 gene_id:8815|Hs108|chr11 ( 89) 620 169.1 3.3e-43 CCDS13129.1 BANF2 gene_id:140836|Hs108|chr20 ( 90) 240 69.5 3.2e-13 CCDS54449.1 BANF2 gene_id:140836|Hs108|chr20 ( 97) 240 69.5 3.4e-13 >>CCDS8125.1 BANF1 gene_id:8815|Hs108|chr11 (89 aa) initn: 620 init1: 620 opt: 620 Z-score: 889.3 bits: 169.1 E(32554): 3.3e-43 Smith-Waterman score: 620; 100.0% identity (100.0% similar) in 89 aa overlap (1-89:1-89) 10 20 30 40 50 60 pF1KE0 MTTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 MTTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR 10 20 30 40 50 60 70 80 pF1KE0 EWLKDTCGANAKQSRDCFGCLREWCDAFL ::::::::::::::::::::::::::::: CCDS81 EWLKDTCGANAKQSRDCFGCLREWCDAFL 70 80 >>CCDS13129.1 BANF2 gene_id:140836|Hs108|chr20 (90 aa) initn: 240 init1: 240 opt: 240 Z-score: 350.8 bits: 69.5 E(32554): 3.2e-13 Smith-Waterman score: 240; 41.9% identity (72.1% similar) in 86 aa overlap (4-89:5-90) 10 20 30 40 50 pF1KE0 MTTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLF : . : :..::.::: : . ::.. :. .: .:..:::..:::::...:.: : CCDS13 MDNMSPRLRAFLSEPIGEKDVCWVDGISHELAINLVTKGINKAYILLGQFLLMHKNEAEF 10 20 30 40 50 60 60 70 80 pF1KE0 REWLKDTCGANAKQSRDCFGCLREWCDAFL ..:: ::. .... ::.::: :: CCDS13 QRWLICCFGATECEAQQTSHCLKEWCACFL 70 80 90 >>CCDS54449.1 BANF2 gene_id:140836|Hs108|chr20 (97 aa) initn: 240 init1: 240 opt: 240 Z-score: 350.3 bits: 69.5 E(32554): 3.4e-13 Smith-Waterman score: 240; 41.9% identity (72.1% similar) in 86 aa overlap (4-89:12-97) 10 20 30 40 50 pF1KE0 MTTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVL : . : :..::.::: : . ::.. :. .: .:..:::..:::::.. CCDS54 MLRGTKEMDNMSPRLRAFLSEPIGEKDVCWVDGISHELAINLVTKGINKAYILLGQFLLM 10 20 30 40 50 60 60 70 80 pF1KE0 KKDEDLFREWLKDTCGANAKQSRDCFGCLREWCDAFL .:.: :..:: ::. .... ::.::: :: CCDS54 HKNEAEFQRWLICCFGATECEAQQTSHCLKEWCACFL 70 80 90 89 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 15:09:36 2016 done: Sun Nov 6 15:09:36 2016 Total Scan time: 1.480 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]