FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2679, 90 aa 1>>>pF1KE2679 90 - 90 aa - 90 aa Library: /omim/omim.rfq.tfa 61265892 residues in 86068 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.6098+/-0.000272; mu= 11.3586+/- 0.017 mean_var=45.6719+/- 8.963, 0's: 0 Z-trim(118.5): 13 B-trim: 111 in 1/54 Lambda= 0.189780 statistics sampled from 31721 (31734) to 31721 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.776), E-opt: 0.2 (0.369), width: 16 Scan time: 4.420 The best scores are: opt bits E(86068) NP_006542 (OMIM: 615061) secretoglobin family 1D m ( 90) 581 165.5 1e-41 NP_006543 (OMIM: 615060) secretoglobin family 1D m ( 90) 348 101.7 1.6e-22 NP_996881 (OMIM: 615062) secretoglobin family 1D m ( 83) 316 93.0 6.6e-20 NP_003348 (OMIM: 192020) uteroglobin precursor [Ho ( 91) 152 48.1 2.4e-06 NP_663626 (OMIM: 610176) secretoglobin family 1C m ( 95) 127 41.2 0.00028 XP_005252861 (OMIM: 610176) PREDICTED: secretoglob ( 138) 127 41.3 0.00039 >>NP_006542 (OMIM: 615061) secretoglobin family 1D membe (90 aa) initn: 581 init1: 581 opt: 581 Z-score: 870.0 bits: 165.5 E(86068): 1e-41 Smith-Waterman score: 581; 100.0% identity (100.0% similar) in 90 aa overlap (1-90:1-90) 10 20 30 40 50 60 pF1KE2 MKLSVCLLLVTLALCCYQANAEFCPALVSELLDFFFISEPLFKLSLAKFDAPPEAVAAKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 MKLSVCLLLVTLALCCYQANAEFCPALVSELLDFFFISEPLFKLSLAKFDAPPEAVAAKL 10 20 30 40 50 60 70 80 90 pF1KE2 GVKRCTDQMSLQKRSLIAEVLVKILKKCSV :::::::::::::::::::::::::::::: NP_006 GVKRCTDQMSLQKRSLIAEVLVKILKKCSV 70 80 90 >>NP_006543 (OMIM: 615060) secretoglobin family 1D membe (90 aa) initn: 348 init1: 348 opt: 348 Z-score: 525.2 bits: 101.7 E(86068): 1.6e-22 Smith-Waterman score: 348; 60.2% identity (83.0% similar) in 88 aa overlap (1-88:1-88) 10 20 30 40 50 60 pF1KE2 MKLSVCLLLVTLALCCYQANAEFCPALVSELLDFFFISEPLFKLSLAKFDAPPEAVAAKL :.:::::::.:::::::.::: : :: ::. :.. ..:.::..:::: :: ::::::. NP_006 MRLSVCLLLLTLALCCYRANAVVCQALGSEITGFLLAGKPVFKFQLAKFKAPLEAVAAKM 10 20 30 40 50 60 70 80 90 pF1KE2 GVKRCTDQMSLQKRSLIAEVLVKILKKCSV ::.:.: :. .:: ::...: :: .:: NP_006 EVKKCVDTMAYEKRVLITKTLGKIAEKCDR 70 80 90 >>NP_996881 (OMIM: 615062) secretoglobin family 1D membe (83 aa) initn: 316 init1: 316 opt: 316 Z-score: 478.4 bits: 93.0 E(86068): 6.6e-20 Smith-Waterman score: 316; 60.8% identity (87.8% similar) in 74 aa overlap (1-74:1-74) 10 20 30 40 50 60 pF1KE2 MKLSVCLLLVTLALCCYQANAEFCPALVSELLDFFFISEPLFKLSLAKFDAPPEAVAAKL :.::::::.:.::::::::.: :::..::. :.:.:. .:..::.. ::::.:::: NP_996 MRLSVCLLMVSLALCCYQAHALVCPAVASEITVFLFLSDAAVNLQVAKLNPPPEALAAKL 10 20 30 40 50 60 70 80 90 pF1KE2 GVKRCTDQMSLQKRSLIAEVLVKILKKCSV ::.::::.:..:: NP_996 EVKHCTDQISFKKRLSLKKSWWK 70 80 >>NP_003348 (OMIM: 192020) uteroglobin precursor [Homo s (91 aa) initn: 149 init1: 149 opt: 152 Z-score: 235.1 bits: 48.1 E(86068): 2.4e-06 Smith-Waterman score: 152; 31.8% identity (65.9% similar) in 85 aa overlap (1-84:1-84) 10 20 30 40 50 pF1KE2 MKLSVCLLLVTLALCCYQANAEFCPALVSELLDFFFISEPL-FKLSLAKFDAPPEAVAAK :::.: : :::::::: .:.::.::.. ..... .... : .. .. :. . : NP_003 MKLAVTLTLVTLALCCSSASAEICPSF-QRVIETLLMDTPSSYEAAMELFSPDQDMREAG 10 20 30 40 50 60 70 80 90 pF1KE2 LGVKRCTDQMSLQKRSLIAEVLVKILKKCSV .:. .: . . : : ... :: NP_003 AQLKKLVDTLPQKPRESIIKLMEKIAQSSLCN 60 70 80 90 >>NP_663626 (OMIM: 610176) secretoglobin family 1C membe (95 aa) initn: 69 init1: 51 opt: 127 Z-score: 197.8 bits: 41.2 E(86068): 0.00028 Smith-Waterman score: 127; 30.3% identity (68.5% similar) in 89 aa overlap (1-85:1-89) 10 20 30 40 50 pF1KE2 MKLSVCLLLVTLAL-C-CYQANAEFCPALVSELLDFFFISEP--LFKLSLAKFDAPPEAV :: : ::::.:.: : : .:..: . ..:. .... : :.. .:.:... .: NP_663 MKGSRALLLVALTLFCICRMATGEDNDEFFMDFLQTLLVGTPEELYEGTLGKYNVNEDAK 10 20 30 40 50 60 60 70 80 90 pF1KE2 AAKLGVKRCTDQMSLQKRSLIAEVLVKILKKCSV :: .: : : .. .... ....::..: NP_663 AAMTELKSCIDGLQPMHKAELVKLLVQVLGSQDGA 70 80 90 >>XP_005252861 (OMIM: 610176) PREDICTED: secretoglobin f (138 aa) initn: 60 init1: 51 opt: 127 Z-score: 195.3 bits: 41.3 E(86068): 0.00039 Smith-Waterman score: 127; 30.3% identity (68.5% similar) in 89 aa overlap (1-85:44-132) 10 20 pF1KE2 MKLSVCLLLVTLAL-C-CYQANAEFCPALV :: : ::::.:.: : : .:..: . XP_005 ANPGCNQERCCPVRHKIPGFWLEAAPETAGMKGSRALLLVALTLFCICRMATGEDNDEFF 20 30 40 50 60 70 30 40 50 60 70 80 pF1KE2 SELLDFFFISEP--LFKLSLAKFDAPPEAVAAKLGVKRCTDQMSLQKRSLIAEVLVKILK ..:. .... : :.. .:.:... .: :: .: : : .. .... ....::..: XP_005 MDFLQTLLVGTPEELYEGTLGKYNVNEDAKAAMTELKSCIDGLQPMHKAELVKLLVQVLG 80 90 100 110 120 130 90 pF1KE2 KCSV XP_005 SQDGA 90 residues in 1 query sequences 61265892 residues in 86068 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Feb 17 10:49:27 2017 done: Fri Feb 17 10:49:28 2017 Total Scan time: 4.420 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]