FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2679, 90 aa 1>>>pF1KE2679 90 - 90 aa - 90 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.6848+/-0.000511; mu= 10.9474+/- 0.031 mean_var=45.1955+/- 8.924, 0's: 0 Z-trim(112.1): 11 B-trim: 0 in 0/52 Lambda= 0.190777 statistics sampled from 12905 (12915) to 12905 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.793), E-opt: 0.2 (0.397), width: 16 Scan time: 1.440 The best scores are: opt bits E(32554) CCDS8017.1 SCGB1D2 gene_id:10647|Hs108|chr11 ( 90) 581 166.2 2.4e-42 CCDS8015.1 SCGB1D1 gene_id:10648|Hs108|chr11 ( 90) 348 102.1 4.8e-23 CCDS31583.1 SCGB1D4 gene_id:404552|Hs108|chr11 ( 83) 316 93.3 2e-20 >>CCDS8017.1 SCGB1D2 gene_id:10647|Hs108|chr11 (90 aa) initn: 581 init1: 581 opt: 581 Z-score: 873.8 bits: 166.2 E(32554): 2.4e-42 Smith-Waterman score: 581; 100.0% identity (100.0% similar) in 90 aa overlap (1-90:1-90) 10 20 30 40 50 60 pF1KE2 MKLSVCLLLVTLALCCYQANAEFCPALVSELLDFFFISEPLFKLSLAKFDAPPEAVAAKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS80 MKLSVCLLLVTLALCCYQANAEFCPALVSELLDFFFISEPLFKLSLAKFDAPPEAVAAKL 10 20 30 40 50 60 70 80 90 pF1KE2 GVKRCTDQMSLQKRSLIAEVLVKILKKCSV :::::::::::::::::::::::::::::: CCDS80 GVKRCTDQMSLQKRSLIAEVLVKILKKCSV 70 80 90 >>CCDS8015.1 SCGB1D1 gene_id:10648|Hs108|chr11 (90 aa) initn: 348 init1: 348 opt: 348 Z-score: 527.2 bits: 102.1 E(32554): 4.8e-23 Smith-Waterman score: 348; 60.2% identity (83.0% similar) in 88 aa overlap (1-88:1-88) 10 20 30 40 50 60 pF1KE2 MKLSVCLLLVTLALCCYQANAEFCPALVSELLDFFFISEPLFKLSLAKFDAPPEAVAAKL :.:::::::.:::::::.::: : :: ::. :.. ..:.::..:::: :: ::::::. CCDS80 MRLSVCLLLLTLALCCYRANAVVCQALGSEITGFLLAGKPVFKFQLAKFKAPLEAVAAKM 10 20 30 40 50 60 70 80 90 pF1KE2 GVKRCTDQMSLQKRSLIAEVLVKILKKCSV ::.:.: :. .:: ::...: :: .:: CCDS80 EVKKCVDTMAYEKRVLITKTLGKIAEKCDR 70 80 90 >>CCDS31583.1 SCGB1D4 gene_id:404552|Hs108|chr11 (83 aa) initn: 316 init1: 316 opt: 316 Z-score: 480.2 bits: 93.3 E(32554): 2e-20 Smith-Waterman score: 316; 60.8% identity (87.8% similar) in 74 aa overlap (1-74:1-74) 10 20 30 40 50 60 pF1KE2 MKLSVCLLLVTLALCCYQANAEFCPALVSELLDFFFISEPLFKLSLAKFDAPPEAVAAKL :.::::::.:.::::::::.: :::..::. :.:.:. .:..::.. ::::.:::: CCDS31 MRLSVCLLMVSLALCCYQAHALVCPAVASEITVFLFLSDAAVNLQVAKLNPPPEALAAKL 10 20 30 40 50 60 70 80 90 pF1KE2 GVKRCTDQMSLQKRSLIAEVLVKILKKCSV ::.::::.:..:: CCDS31 EVKHCTDQISFKKRLSLKKSWWK 70 80 90 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Feb 17 10:49:27 2017 done: Fri Feb 17 10:49:27 2017 Total Scan time: 1.440 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]