FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3034, 166 aa 1>>>pF1KE3034 166 - 166 aa - 166 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3280+/-0.00069; mu= 12.2134+/- 0.042 mean_var=63.3894+/-12.573, 0's: 0 Z-trim(109.1): 13 B-trim: 0 in 0/51 Lambda= 0.161089 statistics sampled from 10643 (10645) to 10643 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.728), E-opt: 0.2 (0.327), width: 16 Scan time: 1.930 The best scores are: opt bits E(32554) CCDS8007.1 SDHAF2 gene_id:54949|Hs108|chr11 ( 166) 1095 262.5 8.5e-71 >>CCDS8007.1 SDHAF2 gene_id:54949|Hs108|chr11 (166 aa) initn: 1095 init1: 1095 opt: 1095 Z-score: 1384.5 bits: 262.5 E(32554): 8.5e-71 Smith-Waterman score: 1095; 100.0% identity (100.0% similar) in 166 aa overlap (1-166:1-166) 10 20 30 40 50 60 pF1KE3 MAVSTVFSTSSLMLALSRHSLLSPLLSVTSFRRFYRGDSPTDSQKDMIEIPLPPWQERTD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS80 MAVSTVFSTSSLMLALSRHSLLSPLLSVTSFRRFYRGDSPTDSQKDMIEIPLPPWQERTD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 ESIETKRARLLYESRKRGMLENCILLSLFAKEHLQHMTEKQLNLYDRLINEPSNDWDIYY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS80 ESIETKRARLLYESRKRGMLENCILLSLFAKEHLQHMTEKQLNLYDRLINEPSNDWDIYY 70 80 90 100 110 120 130 140 150 160 pF1KE3 WATEAKPAPEIFENEVMALLRDFAKNKNKEQRLRAPDLEYLFEKPR :::::::::::::::::::::::::::::::::::::::::::::: CCDS80 WATEAKPAPEIFENEVMALLRDFAKNKNKEQRLRAPDLEYLFEKPR 130 140 150 160 166 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 15:10:46 2016 done: Sun Nov 6 15:10:47 2016 Total Scan time: 1.930 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]