FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5236, 251 aa 1>>>pF1KE5236 251 - 251 aa - 251 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3581+/-0.000325; mu= 14.5937+/- 0.020 mean_var=66.6579+/-13.240, 0's: 0 Z-trim(115.6): 8 B-trim: 0 in 0/50 Lambda= 0.157090 statistics sampled from 26180 (26181) to 26180 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.691), E-opt: 0.2 (0.307), width: 16 Scan time: 5.840 The best scores are: opt bits E(85289) NP_060310 (OMIM: 611829) 39S ribosomal protein L16 ( 251) 1712 396.5 2.4e-110 >>NP_060310 (OMIM: 611829) 39S ribosomal protein L16, mi (251 aa) initn: 1712 init1: 1712 opt: 1712 Z-score: 2102.0 bits: 396.5 E(85289): 2.4e-110 Smith-Waterman score: 1712; 100.0% identity (100.0% similar) in 251 aa overlap (1-251:1-251) 10 20 30 40 50 60 pF1KE5 MWRLLARASAPLLRVPLSDSWALLPASAGVKTLLPVPSFEDVSIPEKPKLRFIERAPLVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 MWRLLARASAPLLRVPLSDSWALLPASAGVKTLLPVPSFEDVSIPEKPKLRFIERAPLVP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 KVRREPKNLSDIRGPSTEATEFTEGNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 KVRREPKNLSDIRGPSTEATEFTEGNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 IWRVPAPFKPITRKSVGHRMGGGKGAIDHYVTPVKAGRLVVEMGGRCEFEEVQGFLDQVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 IWRVPAPFKPITRKSVGHRMGGGKGAIDHYVTPVKAGRLVVEMGGRCEFEEVQGFLDQVA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 HKLPFAAKAVSRGTLEKMRKDQEERERNNQNPWTFERIATANMLGIRKVLSPYDLTHKGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 HKLPFAAKAVSRGTLEKMRKDQEERERNNQNPWTFERIATANMLGIRKVLSPYDLTHKGK 190 200 210 220 230 240 250 pF1KE5 YWGKFYMPKRV ::::::::::: NP_060 YWGKFYMPKRV 250 251 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:46:22 2016 done: Mon Nov 7 22:46:23 2016 Total Scan time: 5.840 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]