FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5236, 251 aa 1>>>pF1KE5236 251 - 251 aa - 251 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3940+/-0.000731; mu= 14.2671+/- 0.044 mean_var=64.5759+/-12.923, 0's: 0 Z-trim(108.7): 16 B-trim: 0 in 0/50 Lambda= 0.159602 statistics sampled from 10388 (10391) to 10388 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.319), width: 16 Scan time: 1.790 The best scores are: opt bits E(32554) CCDS7976.1 MRPL16 gene_id:54948|Hs108|chr11 ( 251) 1712 402.5 1.4e-112 >>CCDS7976.1 MRPL16 gene_id:54948|Hs108|chr11 (251 aa) initn: 1712 init1: 1712 opt: 1712 Z-score: 2134.5 bits: 402.5 E(32554): 1.4e-112 Smith-Waterman score: 1712; 100.0% identity (100.0% similar) in 251 aa overlap (1-251:1-251) 10 20 30 40 50 60 pF1KE5 MWRLLARASAPLLRVPLSDSWALLPASAGVKTLLPVPSFEDVSIPEKPKLRFIERAPLVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS79 MWRLLARASAPLLRVPLSDSWALLPASAGVKTLLPVPSFEDVSIPEKPKLRFIERAPLVP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 KVRREPKNLSDIRGPSTEATEFTEGNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS79 KVRREPKNLSDIRGPSTEATEFTEGNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 IWRVPAPFKPITRKSVGHRMGGGKGAIDHYVTPVKAGRLVVEMGGRCEFEEVQGFLDQVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS79 IWRVPAPFKPITRKSVGHRMGGGKGAIDHYVTPVKAGRLVVEMGGRCEFEEVQGFLDQVA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 HKLPFAAKAVSRGTLEKMRKDQEERERNNQNPWTFERIATANMLGIRKVLSPYDLTHKGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS79 HKLPFAAKAVSRGTLEKMRKDQEERERNNQNPWTFERIATANMLGIRKVLSPYDLTHKGK 190 200 210 220 230 240 250 pF1KE5 YWGKFYMPKRV ::::::::::: CCDS79 YWGKFYMPKRV 250 251 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:46:22 2016 done: Mon Nov 7 22:46:22 2016 Total Scan time: 1.790 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]