Result of FASTA (ccds) for
pFN21AB0932
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0932, 208 aa
1>>>pF1KB0932 208 - 208 aa - 208 aa
Library: human.CCDS.faa
18921897 residues in 33420 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9671+/-0.000884; mu= 11.5435+/- 0.053
mean_var=118.3697+/-24.859, 0's: 0 Z-trim(110.0): 118 B-trim: 414 in 1/52
Lambda= 0.117884
statistics sampled from 11312 (11450) to 11312 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.716), E-opt: 0.2 (0.343), width: 16
Scan time: 0.910
The best scores are: opt bits E(33420)
CCDS7947.2 TRIM48 gene_id:79097|Hs109|chr11 ( 224) 1474 261.1 3.9e-70
CCDS60930.1 TRIM49D1 gene_id:399939|Hs109|chr11 ( 452) 1157 207.5 1.1e-53
CCDS8287.1 TRIM49 gene_id:57093|Hs109|chr11 ( 452) 1041 187.8 9.4e-48
CCDS53694.1 TRIM49C gene_id:642612|Hs109|chr11 ( 452) 1041 187.8 9.4e-48
CCDS55762.1 TRIM49B gene_id:283116|Hs109|chr11 ( 452) 1027 185.4 4.9e-47
CCDS2015.1 TRIM43 gene_id:129868|Hs109|chr2 ( 446) 729 134.7 8.7e-32
CCDS53693.1 TRIM64B gene_id:642446|Hs109|chr11 ( 449) 568 107.3 1.5e-23
CCDS73363.1 TRIM64 gene_id:120146|Hs109|chr11 ( 449) 561 106.1 3.5e-23
CCDS73287.1 TRIM64C gene_id:646754|Hs109|chr11 ( 450) 530 100.9 1.4e-21
CCDS60929.1 TRIM77 gene_id:390231|Hs109|chr11 ( 450) 487 93.6 2.2e-19
CCDS5678.1 TRIM4 gene_id:89122|Hs109|chr7 ( 474) 397 78.3 9e-15
CCDS34378.1 TRIM39 gene_id:56658|Hs109|chr6 ( 488) 358 71.6 9.2e-13
CCDS78121.1 RPP21 gene_id:202658|Hs109|chr6 ( 503) 358 71.7 9.4e-13
CCDS34377.1 TRIM39 gene_id:56658|Hs109|chr6 ( 518) 358 71.7 9.6e-13
CCDS31048.1 TRIM11 gene_id:81559|Hs109|chr1 ( 468) 355 71.1 1.3e-12
CCDS31356.1 TRIM68 gene_id:55128|Hs109|chr11 ( 485) 350 70.3 2.3e-12
CCDS4654.1 TRIM27 gene_id:5987|Hs109|chr6 ( 513) 348 70.0 3.1e-12
CCDS3808.1 TRIM60 gene_id:166655|Hs109|chr4 ( 471) 346 69.6 3.7e-12
CCDS44327.1 TRIM17 gene_id:51127|Hs109|chr1 ( 343) 344 69.1 3.7e-12
CCDS1571.1 TRIM17 gene_id:51127|Hs109|chr1 ( 477) 344 69.3 4.7e-12
CCDS44525.1 TRIM21 gene_id:6737|Hs109|chr11 ( 475) 342 68.9 5.9e-12
CCDS5679.1 TRIM4 gene_id:89122|Hs109|chr7 ( 500) 341 68.8 6.9e-12
CCDS31390.1 TRIM6 gene_id:117854|Hs109|chr11 ( 488) 331 67.1 2.2e-11
CCDS31389.1 TRIM6 gene_id:117854|Hs109|chr11 ( 516) 331 67.1 2.3e-11
CCDS31388.1 TRIM34 gene_id:445372|Hs109|chr11 ( 842) 331 67.3 3.2e-11
CCDS31392.1 TRIM5 gene_id:85363|Hs109|chr11 ( 326) 322 65.4 4.8e-11
CCDS31394.1 TRIM5 gene_id:85363|Hs109|chr11 ( 347) 322 65.4 5e-11
CCDS31393.1 TRIM5 gene_id:85363|Hs109|chr11 ( 493) 322 65.5 6.4e-11
CCDS34093.1 TRIM61 gene_id:391712|Hs109|chr4 ( 209) 316 64.1 7.1e-11
>>CCDS7947.2 TRIM48 gene_id:79097|Hs109|chr11 (224 aa)
initn: 1474 init1: 1474 opt: 1474 Z-score: 1372.9 bits: 261.1 E(33420): 3.9e-70
Smith-Waterman score: 1474; 100.0% identity (100.0% similar) in 208 aa overlap (1-208:17-224)
10 20 30 40
pF1KB0 MNSGISQVFQRELTCPICMNYFIDPVTIDCGHSFCRPCFYLNWQ
::::::::::::::::::::::::::::::::::::::::::::
CCDS79 MSRRIIVGTLQRTQRNMNSGISQVFQRELTCPICMNYFIDPVTIDCGHSFCRPCFYLNWQ
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB0 DIPILTQCFECIKTIQQRNLKTNIRLKKMASLARKASLWLFLSSEEQMCGIHRETKKMFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 DIPILTQCFECIKTIQQRNLKTNIRLKKMASLARKASLWLFLSSEEQMCGIHRETKKMFC
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB0 EVDRSLLCLLCSSSQEHRYHRHCPAEWAAEEHWEKLLKKMQSLWEKACENQRNLNVETTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 EVDRSLLCLLCSSSQEHRYHRHCPAEWAAEEHWEKLLKKMQSLWEKACENQRNLNVETTR
130 140 150 160 170 180
170 180 190 200
pF1KB0 ISHWKAFGDILYRSESVLLHMPQPLNLALRAGPITGLRDRLNQF
::::::::::::::::::::::::::::::::::::::::::::
CCDS79 ISHWKAFGDILYRSESVLLHMPQPLNLALRAGPITGLRDRLNQF
190 200 210 220
>>CCDS60930.1 TRIM49D1 gene_id:399939|Hs109|chr11 (452 aa)
initn: 1198 init1: 1156 opt: 1157 Z-score: 1077.7 bits: 207.5 E(33420): 1.1e-53
Smith-Waterman score: 1157; 89.5% identity (94.5% similar) in 181 aa overlap (1-181:1-179)
10 20 30 40 50 60
pF1KB0 MNSGISQVFQRELTCPICMNYFIDPVTIDCGHSFCRPCFYLNWQDIPILTQCFECIKTIQ
::::::::::::::::::.::::::::::::::::::::::::::::::::::::.:: :
CCDS60 MNSGISQVFQRELTCPICLNYFIDPVTIDCGHSFCRPCFYLNWQDIPILTQCFECLKTTQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 QRNLKTNIRLKKMASLARKASLWLFLSSEEQMCGIHRETKKMFCEVDRSLLCLLCSSSQE
::::::::::::::: :::::::::::::::::: ::::::.:::::::::::::::: :
CCDS60 QRNLKTNIRLKKMASRARKASLWLFLSSEEQMCGTHRETKKIFCEVDRSLLCLLCSSSLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 HRYHRHCPAEWAAEEHWEKLLKKMQSLWEKACENQRNLNVETTRISHWKAFGDILYRSES
:::::::::::::::: :::::::::::::.:::::::::::::::::: . .. : :.
CCDS60 HRYHRHCPAEWAAEEHREKLLKKMQSLWEKVCENQRNLNVETTRISHWKDYVNV--RLEA
130 140 150 160 170
190 200
pF1KB0 VLLHMPQPLNLALRAGPITGLRDRLNQF
.
CCDS60 IRAEYQKMPAFHHEEEKHNLEMLKKKGKDIFHRLHLSKAKMAHRREILRGTYAELMKMCH
180 190 200 210 220 230
>>CCDS8287.1 TRIM49 gene_id:57093|Hs109|chr11 (452 aa)
initn: 1063 init1: 1040 opt: 1041 Z-score: 971.0 bits: 187.8 E(33420): 9.4e-48
Smith-Waterman score: 1041; 81.2% identity (89.5% similar) in 181 aa overlap (1-181:1-179)
10 20 30 40 50 60
pF1KB0 MNSGISQVFQRELTCPICMNYFIDPVTIDCGHSFCRPCFYLNWQDIPILTQCFECIKTIQ
::::: :::: :: ::.::::::::::::::::::::::::::::::.:.:: :: :. .
CCDS82 MNSGILQVFQGELICPLCMNYFIDPVTIDCGHSFCRPCFYLNWQDIPFLVQCSECTKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 QRNLKTNIRLKKMASLARKASLWLFLSSEEQMCGIHRETKKMFCEVDRSLLCLLCSSSQE
: ::::::.::::::::::.:::::::::::::: ::::::.::::::::::::::::::
CCDS82 QINLKTNIHLKKMASLARKVSLWLFLSSEEQMCGTHRETKKIFCEVDRSLLCLLCSSSQE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 HRYHRHCPAEWAAEEHWEKLLKKMQSLWEKACENQRNLNVETTRISHWKAFGDILYRSES
:::::: : ::::::: ::::.::::::::::::.::::::::: :: . .. : :.
CCDS82 HRYHRHRPIEWAAEEHREKLLQKMQSLWEKACENHRNLNVETTRTRCWKDYVNL--RLEA
130 140 150 160 170
190 200
pF1KB0 VLLHMPQPLNLALRAGPITGLRDRLNQF
.
CCDS82 IRAEYQKMPAFHHEEEKHNLEMLKKKGKEIFHRLHLSKAKMAHRMEILRGMYEELNEMCH
180 190 200 210 220 230
>>CCDS53694.1 TRIM49C gene_id:642612|Hs109|chr11 (452 aa)
initn: 1063 init1: 1040 opt: 1041 Z-score: 971.0 bits: 187.8 E(33420): 9.4e-48
Smith-Waterman score: 1041; 81.2% identity (89.5% similar) in 181 aa overlap (1-181:1-179)
10 20 30 40 50 60
pF1KB0 MNSGISQVFQRELTCPICMNYFIDPVTIDCGHSFCRPCFYLNWQDIPILTQCFECIKTIQ
::::: :::: :: ::.::::::::::::::::::::::::::::::.:.:: :: :. .
CCDS53 MNSGILQVFQGELICPLCMNYFIDPVTIDCGHSFCRPCFYLNWQDIPFLVQCSECTKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 QRNLKTNIRLKKMASLARKASLWLFLSSEEQMCGIHRETKKMFCEVDRSLLCLLCSSSQE
: ::::::.::::::::::.:::::::::::::: ::::::.::::::::::::::::::
CCDS53 QINLKTNIHLKKMASLARKVSLWLFLSSEEQMCGTHRETKKIFCEVDRSLLCLLCSSSQE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 HRYHRHCPAEWAAEEHWEKLLKKMQSLWEKACENQRNLNVETTRISHWKAFGDILYRSES
:::::: : ::::::: ::::.::::::::::::.::::::::: :: . .. : :.
CCDS53 HRYHRHRPIEWAAEEHREKLLQKMQSLWEKACENHRNLNVETTRTRCWKDYVNL--RLEA
130 140 150 160 170
190 200
pF1KB0 VLLHMPQPLNLALRAGPITGLRDRLNQF
.
CCDS53 IRAEYQKMPAFHHEEEKHNLEMLKKKGKEIFHRLHLSKAKMAHRMEILRGMYEELNEMCH
180 190 200 210 220 230
>>CCDS55762.1 TRIM49B gene_id:283116|Hs109|chr11 (452 aa)
initn: 1049 init1: 1026 opt: 1027 Z-score: 958.2 bits: 185.4 E(33420): 4.9e-47
Smith-Waterman score: 1027; 80.7% identity (88.4% similar) in 181 aa overlap (1-181:1-179)
10 20 30 40 50 60
pF1KB0 MNSGISQVFQRELTCPICMNYFIDPVTIDCGHSFCRPCFYLNWQDIPILTQCFECIKTIQ
::::: ::::::: :::::::::::::::::::::::::::::.: :.:.:: :: :.
CCDS55 MNSGILQVFQRELICPICMNYFIDPVTIDCGHSFCRPCFYLNWKDSPFLVQCSECTKSTG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 QRNLKTNIRLKKMASLARKASLWLFLSSEEQMCGIHRETKKMFCEVDRSLLCLLCSSSQE
: ::::::..:::::::::.:::::::::::::: :::::::::::::::::::::::::
CCDS55 QINLKTNIHFKKMASLARKVSLWLFLSSEEQMCGTHRETKKMFCEVDRSLLCLLCSSSQE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 HRYHRHCPAEWAAEEHWEKLLKKMQSLWEKACENQRNLNVETTRISHWKAFGDILYRSES
:: ::::: : ::::: ::::.::::::::::::.::::::::: :: . .. : :.
CCDS55 HRDHRHCPIESAAEEHQEKLLQKMQSLWEKACENHRNLNVETTRTRCWKDYVNL--RLEA
130 140 150 160 170
190 200
pF1KB0 VLLHMPQPLNLALRAGPITGLRDRLNQF
.
CCDS55 IRAEYQKMPAFHHEEEKHNLEMLKKKGKDIFHRLHLSKAKMAHRREILRGMYEELNEMCH
180 190 200 210 220 230
>>CCDS2015.1 TRIM43 gene_id:129868|Hs109|chr2 (446 aa)
initn: 872 init1: 709 opt: 729 Z-score: 684.3 bits: 134.7 E(33420): 8.7e-32
Smith-Waterman score: 729; 55.8% identity (78.5% similar) in 181 aa overlap (1-181:1-179)
10 20 30 40 50 60
pF1KB0 MNSGISQVFQRELTCPICMNYFIDPVTIDCGHSFCRPCFYLNWQDIPILTQCFECIKTIQ
:.: .:..::.:::: ::.::..::::: :::::::::. :.:.. ..: : .
CCDS20 MDSDFSHAFQKELTCVICLNYLVDPVTICCGHSFCRPCLCLSWEEAQSPANCPACREPSP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 QRNLKTNIRLKKMASLARKASLWLFLSSEEQMCGIHRETKKMFCEVDRSLLCLLCSSSQE
. ..:::: ::.....::::::: :::::.:.:: ::.::::::..:.::::::::.:::
CCDS20 KMDFKTNILLKNLVTIARKASLWQFLSSEKQICGTHRQTKKMFCDMDKSLLCLLCSNSQE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 HRYHRHCPAEWAAEEHWEKLLKKMQSLWEKACENQRNLNVETTRISHWKAFGDILYRSES
: :.: : : ::::: :::::.:. ::.: :::::: : :. :... :..
CCDS20 HGAHKHHPIEEAAEEHREKLLKQMRILWKKIQENQRNLYEEGRTAFLWR--GNVVLRAQM
130 140 150 160 170
190 200
pF1KB0 VLLHMPQPLNLALRAGPITGLRDRLNQF
.
CCDS20 IRNEYRKLHPVLHKEEKQHLERLNKEYQEIFQQLQRSWVKMDQKSKHLKEMYQELMEMCH
180 190 200 210 220 230
>>CCDS53693.1 TRIM64B gene_id:642446|Hs109|chr11 (449 aa)
initn: 587 init1: 299 opt: 568 Z-score: 536.3 bits: 107.3 E(33420): 1.5e-23
Smith-Waterman score: 568; 47.6% identity (68.4% similar) in 187 aa overlap (1-186:1-186)
10 20 30 40 50 60
pF1KB0 MNSGISQVFQRELTCPICMNYFIDPVTIDCGHSFCRPCFYLNWQDIPILTQCFECIKTIQ
:.: :::: :: : ::.:::::::::::::::::::. : .. .: : :: .
CCDS53 MDSDDLQVFQNELICCICVNYFIDPVTIDCGHSFCRPCLCLCSEEGRAPMRCPSCRKTSE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 QRNLKTNIRLKKMASLARKASLWLFLSSEEQMCGIHRETKKMFCEVDRSLLCLLCSSSQE
. :..::. :::..::::.. ..: ...: .:.:::..:::.:. ::: :: : :
CCDS53 KPNFNTNLVLKKLSSLARQTRPQN-INSSDNICVLHEETKELFCEADKRLLCGPCSESPE
70 80 90 100 110
130 140 150 160 170 180
pF1KB0 HRYHRHCPAEWAAEEHWEKLLKKMQSLWEKACENQRNLNVETTRISHWKAFGDILYRSES
: : : : ::::: :::.:.:. ::: :.. ::: ::. . : . .. : .
CCDS53 HMAHSHSPIGWAAEECREKLIKEMDYLWEINQETRNNLNQETSTFHSLKDYVSVRKRIIT
120 130 140 150 160 170
190 200
pF1KB0 VLLH-MPQPLNLALRAGPITGLRDRLNQF
. . ::
CCDS53 IQYQKMPIFLDEEEQRHLQALEREAEELFQQLQDSQVRMTQHLERMKDMYRELWETCHMP
180 190 200 210 220 230
>>CCDS73363.1 TRIM64 gene_id:120146|Hs109|chr11 (449 aa)
initn: 613 init1: 295 opt: 561 Z-score: 529.9 bits: 106.1 E(33420): 3.5e-23
Smith-Waterman score: 561; 47.1% identity (67.4% similar) in 187 aa overlap (1-186:1-186)
10 20 30 40 50 60
pF1KB0 MNSGISQVFQRELTCPICMNYFIDPVTIDCGHSFCRPCFYLNWQDIPILTQCFECIKTIQ
:.: :::: :: : ::.:::::::::::::::::::. : .. .: : : .
CCDS73 MDSDDLQVFQNELICCICVNYFIDPVTIDCGHSFCRPCLCLCSEEGRAPMRCPSCRKISE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 QRNLKTNIRLKKMASLARKASLWLFLSSEEQMCGIHRETKKMFCEVDRSLLCLLCSSSQE
. :..::. :::..::::.. ..: ...: .:.:::..:::.:. ::: :: : :
CCDS73 KPNFNTNVVLKKLSSLARQTRPQN-INSSDNICVLHEETKELFCEADKRLLCGPCSESPE
70 80 90 100 110
130 140 150 160 170 180
pF1KB0 HRYHRHCPAEWAAEEHWEKLLKKMQSLWEKACENQRNLNVETTRISHWKAFGDILYRSES
: : : : ::::: :::.:.:. ::: :.. ::: :: . : . .. : .
CCDS73 HMAHSHSPIGWAAEECREKLIKEMDYLWEINQETRNNLNQETRTFHSLKDYVSVRKRIIT
120 130 140 150 160 170
190 200
pF1KB0 VLLH-MPQPLNLALRAGPITGLRDRLNQF
. . ::
CCDS73 IQYQKMPIFLDEEEQRHLQALEREAEELFQQLQDSQVRMTQHLERMKDMYRELWETCHVP
180 190 200 210 220 230
>>CCDS73287.1 TRIM64C gene_id:646754|Hs109|chr11 (450 aa)
initn: 558 init1: 317 opt: 530 Z-score: 501.4 bits: 100.9 E(33420): 1.4e-21
Smith-Waterman score: 530; 49.1% identity (70.3% similar) in 165 aa overlap (1-164:1-164)
10 20 30 40 50 60
pF1KB0 MNSGISQVFQRELTCPICMNYFIDPVTIDCGHSFCRPCFYLNWQDIPILTQCFECIKTIQ
:.: .::: :: : ::.:::::::: :: :::::::. : .. .: : : .
CCDS73 MDSDTLRVFQNELICCICVNYFIDPVTTDCVHSFCRPCLCLCSEEGRAPMRCPLCRKISE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 QRNLKTNIRLKKMASLARKASLWLFLSSEEQMCGIHRETKKMFCEVDRSLLCLLCSSSQE
. :..::. :::.:::::.. ..: ...: .:.:::..:::.:. ::: :: : :
CCDS73 KPNFNTNVALKKLASLARQTRPQN-INSSDNICVLHEETKELFCEADKRLLCGPCSESPE
70 80 90 100 110
130 140 150 160 170
pF1KB0 HRYHRHCPAEWAAEE-HWEKLLKKMQSLWEKACENQRNLNVETTRISHWKAFGDILYRSE
: : : : ::::: . .::.:.:. ::. :.: ::: ::..
CCDS73 HMAHSHSPIGWAAEECRVQKLIKEMDYLWKINQETQNNLNQETSKFCSLVDYVSLRKVII
120 130 140 150 160 170
180 190 200
pF1KB0 SVLLHMPQPLNLALRAGPITGLRDRLNQF
CCDS73 TIQYQKMHIFLDEEEQRHLQALEREAKELFQQLQDSQVRMTQHLEGMKDMYRELWETYHM
180 190 200 210 220 230
>>CCDS60929.1 TRIM77 gene_id:390231|Hs109|chr11 (450 aa)
initn: 567 init1: 463 opt: 487 Z-score: 461.9 bits: 93.6 E(33420): 2.2e-19
Smith-Waterman score: 487; 42.2% identity (65.2% similar) in 187 aa overlap (1-187:1-185)
10 20 30 40 50 60
pF1KB0 MNSGISQVFQRELTCPICMNYFIDPVTIDCGHSFCRPCFYLNWQDIPILTQCFECIKTIQ
: :.:.: :::: :: .:. ::::: ::: :: ::. : :.: . : : . :
CCDS60 MASAITQCSTSELTCSICTDYLTDPVTICCGHRFCSPCLCLLWEDTLTPNCCPVCREISQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 QRNLKTNIRLKKMASLARKASLWLFLSSEEQMCGIHRETKKMFCEVDRSLLCLLCSSSQE
: .: : .:.. .:.. . :: .: :.: :...::.::::::.:::.: .
CCDS60 QMYFKRIIFAEKQVIPTRESVPCQLSSSAMLICRRHQEIKNLICETDRSLLCFLCSQSPR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 HRYHRHCPAEWAAEEHWEKLLKKMQSLWEKACENQRNLNVETTRISHWKAFGDILYRSES
: :.: .. : : . .::: .:.:.:.: .:::::: ::. :. :..: : ::
CCDS60 HATHKHYMTREADEYYRKKLLIQMKSIWKKKQKNQRNLNRETNIIGTWEVF--INLRSMM
130 140 150 160 170
190 200
pF1KB0 VLLHMPQPLNLALRAGPITGLRDRLNQF
. ..:.
CCDS60 ISAEYPKVCQYLREEEQKHVESLAREGRIIFQQLKRSQTRMAKMGILLREMYEKLKEMSC
180 190 200 210 220 230
208 residues in 1 query sequences
18921897 residues in 33420 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Jul 3 20:38:40 2020 done: Fri Jul 3 20:38:41 2020
Total Scan time: 0.910 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]