FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5556, 374 aa 1>>>pF1KE5556 374 - 374 aa - 374 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5147+/-0.00104; mu= 15.2614+/- 0.063 mean_var=61.3552+/-12.248, 0's: 0 Z-trim(102.2): 33 B-trim: 239 in 1/49 Lambda= 0.163738 statistics sampled from 6845 (6862) to 6845 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.564), E-opt: 0.2 (0.211), width: 16 Scan time: 2.400 The best scores are: opt bits E(32554) CCDS7880.1 EIF3M gene_id:10480|Hs108|chr11 ( 374) 2414 579.1 2.2e-165 CCDS76392.1 EIF3M gene_id:10480|Hs108|chr11 ( 242) 1498 362.7 2e-100 >>CCDS7880.1 EIF3M gene_id:10480|Hs108|chr11 (374 aa) initn: 2414 init1: 2414 opt: 2414 Z-score: 3082.8 bits: 579.1 E(32554): 2.2e-165 Smith-Waterman score: 2414; 100.0% identity (100.0% similar) in 374 aa overlap (1-374:1-374) 10 20 30 40 50 60 pF1KE5 MSVPAFIDISEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKEDDKDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 MSVPAFIDISEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKEDDKDV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 ESVMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 ESVMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 YTVYCSLIKVAASCGAIQYIPTELDQVRKWISDWNLTTEKKHTLLRLLYEALVDCKKSDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 YTVYCSLIKVAASCGAIQYIPTELDQVRKWISDWNLTTEKKHTLLRLLYEALVDCKKSDA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 ASKVMVELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTLKPVKFLEGELIHDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 ASKVMVELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTLKPVKFLEGELIHDL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 LTIFVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKEISFDTMQQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 LTIFVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKEISFDTMQQE 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 LQIGADDVEAFVIDAVRTKMVYCKIDQTQRKVVVSHSTHRTFGKQQWQQLYDTLNAWKQN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 LQIGADDVEAFVIDAVRTKMVYCKIDQTQRKVVVSHSTHRTFGKQQWQQLYDTLNAWKQN 310 320 330 340 350 360 370 pF1KE5 LNKVKNSLLSLSDT :::::::::::::: CCDS78 LNKVKNSLLSLSDT 370 >>CCDS76392.1 EIF3M gene_id:10480|Hs108|chr11 (242 aa) initn: 1498 init1: 1498 opt: 1498 Z-score: 1916.4 bits: 362.7 E(32554): 2e-100 Smith-Waterman score: 1498; 99.1% identity (99.6% similar) in 233 aa overlap (142-374:10-242) 120 130 140 150 160 170 pF1KE5 GMDKNTPVRYTVYCSLIKVAASCGAIQYIPTELDQVRKWISDWNLTTEKKHTLLRLLYEA .: ::::::::::::::::::::::::::: CCDS76 MSVPAFIDISEEDQVRKWISDWNLTTEKKHTLLRLLYEA 10 20 30 180 190 200 210 220 230 pF1KE5 LVDCKKSDAASKVMVELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTLKPVKF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 LVDCKKSDAASKVMVELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTLKPVKF 40 50 60 70 80 90 240 250 260 270 280 290 pF1KE5 LEGELIHDLLTIFVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 LEGELIHDLLTIFVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKE 100 110 120 130 140 150 300 310 320 330 340 350 pF1KE5 ISFDTMQQELQIGADDVEAFVIDAVRTKMVYCKIDQTQRKVVVSHSTHRTFGKQQWQQLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 ISFDTMQQELQIGADDVEAFVIDAVRTKMVYCKIDQTQRKVVVSHSTHRTFGKQQWQQLY 160 170 180 190 200 210 360 370 pF1KE5 DTLNAWKQNLNKVKNSLLSLSDT ::::::::::::::::::::::: CCDS76 DTLNAWKQNLNKVKNSLLSLSDT 220 230 240 374 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 01:47:42 2016 done: Tue Nov 8 01:47:43 2016 Total Scan time: 2.400 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]