FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2337, 867 aa 1>>>pF1KE2337 867 - 867 aa - 867 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.6559+/-0.00111; mu= 1.3374+/- 0.066 mean_var=229.6621+/-46.367, 0's: 0 Z-trim(109.7): 38 B-trim: 0 in 0/52 Lambda= 0.084631 statistics sampled from 11080 (11098) to 11080 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.68), E-opt: 0.2 (0.341), width: 16 Scan time: 3.930 The best scores are: opt bits E(32554) CCDS7849.1 E2F8 gene_id:79733|Hs108|chr11 ( 867) 5678 707.0 3.6e-203 CCDS9016.1 E2F7 gene_id:144455|Hs108|chr12 ( 911) 911 125.0 6e-28 >>CCDS7849.1 E2F8 gene_id:79733|Hs108|chr11 (867 aa) initn: 5678 init1: 5678 opt: 5678 Z-score: 3761.1 bits: 707.0 E(32554): 3.6e-203 Smith-Waterman score: 5678; 100.0% identity (100.0% similar) in 867 aa overlap (1-867:1-867) 10 20 30 40 50 60 pF1KE2 MENEKENLFCEPHKRGLMKTPLKESTTANIVLAEIQPDFGPLTTPTKPKEGSQGEPWTPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 MENEKENLFCEPHKRGLMKTPLKESTTANIVLAEIQPDFGPLTTPTKPKEGSQGEPWTPT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 ANLKMLISAVSPEIRNRDQKRGLFDNRSGLPEAKDCIHEHLSGDEFEKSQPSRKEKSLGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 ANLKMLISAVSPEIRNRDQKRGLFDNRSGLPEAKDCIHEHLSGDEFEKSQPSRKEKSLGL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 LCHKFLARYPNYPNPAVNNDICLDEVAEELNVERRRIYDIVNVLESLHMVSRLAKNRYTW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 LCHKFLARYPNYPNPAVNNDICLDEVAEELNVERRRIYDIVNVLESLHMVSRLAKNRYTW 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 HGRHNLNKTLGTLKSIGEENKYAEQIMMIKKKEYEQEFDFIKSYSIEDHIIKSNTGPNGH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 HGRHNLNKTLGTLKSIGEENKYAEQIMMIKKKEYEQEFDFIKSYSIEDHIIKSNTGPNGH 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 PDMCFVELPGVEFRAASVNSRKDKSLRVMSQKFVMLFLVSTPQIVSLEVAAKILIGEDHV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 PDMCFVELPGVEFRAASVNSRKDKSLRVMSQKFVMLFLVSTPQIVSLEVAAKILIGEDHV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 EDLDKSKFKTKIRRLYDIANVLSSLDLIKKVHVTEERGRKPAFKWTGPEISPNTSGSSPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 EDLDKSKFKTKIRRLYDIANVLSSLDLIKKVHVTEERGRKPAFKWTGPEISPNTSGSSPV 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE2 IHFTPSDLEVRRSSKENCAKNLFSTRGKPNFTRHPSLIKLVKSIESDRRKINSAPSSPIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 IHFTPSDLEVRRSSKENCAKNLFSTRGKPNFTRHPSLIKLVKSIESDRRKINSAPSSPIK 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE2 TNKAESSQNSAPFPSKMAQLAAICKMQLEEQSSESRQKVKVQLARSGPCKPVAPLDPPVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 TNKAESSQNSAPFPSKMAQLAAICKMQLEEQSSESRQKVKVQLARSGPCKPVAPLDPPVN 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE2 AEMELTAPSLIQPLGMVPLIPSPLSSAVPLILPQAPSGPSYAIYLQPTQAHQSVTPPQGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 AEMELTAPSLIQPLGMVPLIPSPLSSAVPLILPQAPSGPSYAIYLQPTQAHQSVTPPQGL 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE2 SPTVCTTHSSKATGSKDSTDATTEKAANDTSKASASTRPGSLLPAPERQGAKSRTREPAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 SPTVCTTHSSKATGSKDSTDATTEKAANDTSKASASTRPGSLLPAPERQGAKSRTREPAG 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE2 ERGSKRASMLEDSGSKKKFKEDLKGLENVSATLFPSGYLIPLTQCSSLGAESILSGKENS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 ERGSKRASMLEDSGSKKKFKEDLKGLENVSATLFPSGYLIPLTQCSSLGAESILSGKENS 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE2 SALSPNHRIYSSPIAGVIPVTSSELTAVNFPSFHVTPLKLMVSPTSVAAVPVGNSPALAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 SALSPNHRIYSSPIAGVIPVTSSELTAVNFPSFHVTPLKLMVSPTSVAAVPVGNSPALAS 670 680 690 700 710 720 730 740 750 760 770 780 pF1KE2 SHPVPIQNPSSAIVNFTLQHLGLISPNVQLSASPGSGIVPVSPRIESVNVAPENAGTQQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 SHPVPIQNPSSAIVNFTLQHLGLISPNVQLSASPGSGIVPVSPRIESVNVAPENAGTQQG 730 740 750 760 770 780 790 800 810 820 830 840 pF1KE2 RATNYDSPVPGQSQPNGQSVAVTGAQQPVPVTPKGSQLVAESFFRTPGGPTKPTSSSCMD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 RATNYDSPVPGQSQPNGQSVAVTGAQQPVPVTPKGSQLVAESFFRTPGGPTKPTSSSCMD 790 800 810 820 830 840 850 860 pF1KE2 FEGANKTSLGTLFVPQRKLEVSTEDVH ::::::::::::::::::::::::::: CCDS78 FEGANKTSLGTLFVPQRKLEVSTEDVH 850 860 >>CCDS9016.1 E2F7 gene_id:144455|Hs108|chr12 (911 aa) initn: 1206 init1: 499 opt: 911 Z-score: 615.2 bits: 125.0 E(32554): 6e-28 Smith-Waterman score: 1401; 37.3% identity (61.1% similar) in 934 aa overlap (2-863:27-907) 10 20 30 pF1KE2 MEN-EKENLFCEPHKRGLMKTPLKESTTANIVLAE :: .:::.: . ..: :::.:. . CCDS90 MEVNCLTLKDLISPRQPRLDFAVEDGENAQKENIFVD-RSRMAPKTPIKNEPIDLSKQKK 10 20 30 40 50 40 50 60 70 80 90 pF1KE2 IQPDFGPLTTPTKPKEGSQGEPWTPTANLKMLISAVSPEIRNRDQKRGLFDNRSGLPEA- . :. .:.: :.: . .:.:::::::::::::::.::.::.:..:.::: . .: CCDS90 FTPERNPIT-PVKFVDRQQAEPWTPTANLKMLISAASPDIRDREKKKGLFRPIENKDDAF 60 70 80 90 100 110 100 110 120 130 140 pF1KE2 KDCIHEHLSGD----EFEKSQPSRKEKSLGLLCHKFLARYPNYPNPAVNNDICLDEVAEE : .. . :: ::::..::::.:::::::.:::::::.:: . .. : ::::: CCDS90 TDSLQLDVVGDSAVDEFEKQRPSRKQKSLGLLCQKFLARYPSYPLSTEKTTISLDEVAVS 120 130 140 150 160 170 150 160 170 180 190 200 pF1KE2 LNVERRRIYDIVNVLESLHMVSRLAKNRYTWHGRHNLNKTLGTLKSIGEENKYAEQIMMI :.:::::::::::::::::.:::.:::.: :::::.: ::: .:. .:::.:: ::. .. CCDS90 LGVERRRIYDIVNVLESLHLVSRVAKNQYGWHGRHSLPKTLRNLQRLGEEQKYEEQMAYL 180 190 200 210 220 230 210 220 230 240 250 260 pF1KE2 KKKEYEQEFDFIKSYSIEDHIIKSNTGPNGHPDMCFVELPGVEFRAASVNSRKDKSLRVM ..: :.:.: .:.. .. :.. :... .. .... . ..:.:::::::::.: CCDS90 QQK----ELDLI-DYKFGER--KKDGDPDSQEQQ-LLDFSEPDCPSSSANSRKDKSLRIM 240 250 260 270 280 290 270 280 290 300 310 320 pF1KE2 SQKFVMLFLVSTPQIVSLEVAAKILIGEDHVEDLDKSKFKTKIRRLYDIANVLSSLDLIK ::::::::::: .::.:.::::::: :. . :.::::::.::::::::::.:: ::: CCDS90 SQKFVMLFLVSKTKIVTLDVAAKILI-EESQDAPDHSKFKTKVRRLYDIANVLTSLALIK 300 310 320 330 340 330 340 350 360 370 380 pF1KE2 KVHVTEERGRKPAFKWTGPEISPNTSGSSPVIHFTPSDL-EVRRSSK---ENCAKNLFST :::::::::::::::: :: .:.. .. . : : :..: . . :::. CCDS90 KVHVTEERGRKPAFKWIGP--VDFSSSDEELVDVSASVLPELKRETYGQIQVCAKQ---- 350 360 370 380 390 400 390 400 410 420 430 440 pF1KE2 RGKPNFTRHPSLIKLVKSIESDRRKINSAPSSPIKTNKAESSQNSAPFPSKMAQLAAICK ...:: :. . :.. : .::.:: :::: . . :.:. . ....:::. . CCDS90 ----KLARHGSF-NTVQASERIQRKVNSEPSSPYREE-----QGSGGYSLEIGSLAAVYR 410 420 430 440 450 450 460 470 480 490 pF1KE2 MQLEEQSSESRQKVKVQLARSGPCKPVAPLDPPVNAEMELTAPSLIQPLGMVPL------ ...:..:. . : . :. ::::. : .... : . : .:. : CCDS90 QKIEDNSQGKAFASKRVVPPSSSLDPVAPF-PVLSVDPEYCVNPLAHPVFSVAQTDLQAF 460 470 480 490 500 510 500 510 520 530 540 550 pF1KE2 -IPSPLSSAVPLILPQAPSGPSYAIYLQPTQ-AHQSVT--PPQGLSPTVCTTHSSKATGS . . :.. : . : .: :. :.:. : : .. : .: . . . :.:: CCDS90 SMQNGLNGQVDVSLASAASAVES---LKPALLAGQPLVYVPSASLFMLYGSLQEGPASGS 520 530 540 550 560 560 570 580 590 600 pF1KE2 KDSTDATTEKAANDTSKASASTRPGSLL----PAPERQGAKSR-TRE----PAGERGSKR . : . .: . .:: . : : : . : .: .:: : . :. CCDS90 GSERDDRSSEAPATVELSSAPSAQKRLCEERKPQEEDEPATKRQSREYEDGPLSLVMPKK 570 580 590 600 610 620 610 620 630 640 650 pF1KE2 ASMLEDSGSKKKFKE----DLKGLE---NVSATLFPSGYLIPLTQCSS-LGAESILS--- : : .: : . . :: .. .. :. :: . :: : : . CCDS90 PSDSTDLASPKTMGNRASIPLKDIHVNGQLPAAEEISGKATANSLVSSEWGNPSRNTDVE 630 640 650 660 670 680 660 670 680 690 700 pF1KE2 --GKENSSALSPNHRIY---SSPIAGV----IPVTSSEL------TAVNFPSFHVTPLKL .::: :. :. : .:: ::. . ...:. .. ..::: : : . CCDS90 KPSKENESTKEPSLLQYLCVQSP-AGLNGFNVLLSGSQTPPTVGPSSGQLPSFSV-PCMV 690 700 710 720 730 740 710 720 730 740 750 pF1KE2 MVSPTSVAAVPVGNSPALASSHPVPIQN-----PSSAIVNFTLQHLGLISPNVQLSASPG . :: .. :: :::. : :... :... :::.: :: :. :: ..: CCDS90 LPSPP-LGPFPVLYSPAM----PGPVSSTLGALPNTGPVNFSLPGLGSIA---QLLVGPT 750 760 770 780 790 760 770 780 790 800 pF1KE2 SGIVPVSPRIESVNVAPENAGTQQGRATNYDSPVPGQS-----QPN-----GQSVAVTGA . . : : . :.. :. :.. . ::: ..: ::. :. :.:. CCDS90 AVVNPKSSTLPSAD--PQ----LQSQPSLNLSPVMSRSHSVVQQPESPVYVGHPVSVVKL 800 810 820 830 840 850 810 820 830 840 850 860 pF1KE2 QQ-PVPVTPKGSQLVA-ESFFRTPGGPTKPTSSSCMDFEGANKTSLGTLFVPQRKLEVST .: :::::::. : . :.::.:::. :. . .. : .: ::.::. . CCDS90 HQSPVPVTPKSIQRTHRETFFKTPGSLGDPVLKRRERNQSRNTSS------AQRRLEIPS 860 870 880 890 900 pF1KE2 EDVH CCDS90 GGAD 910 867 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 15:13:44 2016 done: Sun Nov 6 15:13:44 2016 Total Scan time: 3.930 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]