FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3024, 141 aa 1>>>pF1KE3024 141 - 141 aa - 141 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3383+/-0.000581; mu= 11.9631+/- 0.035 mean_var=64.8622+/-12.912, 0's: 0 Z-trim(112.5): 5 B-trim: 0 in 0/52 Lambda= 0.159250 statistics sampled from 13289 (13292) to 13289 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.789), E-opt: 0.2 (0.408), width: 16 Scan time: 1.960 The best scores are: opt bits E(32554) CCDS7819.1 CALCA gene_id:796|Hs108|chr11 ( 141) 928 220.8 2.2e-58 CCDS31432.1 CALCA gene_id:796|Hs108|chr11 ( 128) 489 119.9 4.7e-28 CCDS7820.1 CALCB gene_id:797|Hs108|chr11 ( 127) 435 107.5 2.5e-24 >>CCDS7819.1 CALCA gene_id:796|Hs108|chr11 (141 aa) initn: 928 init1: 928 opt: 928 Z-score: 1161.6 bits: 220.8 E(32554): 2.2e-58 Smith-Waterman score: 928; 100.0% identity (100.0% similar) in 141 aa overlap (1-141:1-141) 10 20 30 40 50 60 pF1KE3 MGFQKFSPFLALSILVLLQAGSLHAAPFRSALESSPADPATLSEDEARLLLAALVQDYVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 MGFQKFSPFLALSILVLLQAGSLHAAPFRSALESSPADPATLSEDEARLLLAALVQDYVQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 MKASELEQEQEREGSSLDSPRSKRCGNLSTCMLGTYTQDFNKFHTFPQTAIGVGAPGKKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 MKASELEQEQEREGSSLDSPRSKRCGNLSTCMLGTYTQDFNKFHTFPQTAIGVGAPGKKR 70 80 90 100 110 120 130 140 pF1KE3 DMSSDLERDHRPHVSMPQNAN ::::::::::::::::::::: CCDS78 DMSSDLERDHRPHVSMPQNAN 130 140 >>CCDS31432.1 CALCA gene_id:796|Hs108|chr11 (128 aa) initn: 491 init1: 466 opt: 489 Z-score: 617.1 bits: 119.9 E(32554): 4.7e-28 Smith-Waterman score: 489; 68.0% identity (80.0% similar) in 125 aa overlap (1-120:1-123) 10 20 30 40 50 60 pF1KE3 MGFQKFSPFLALSILVLLQAGSLHAAPFRSALESSPADPATLSEDEARLLLAALVQDYVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 MGFQKFSPFLALSILVLLQAGSLHAAPFRSALESSPADPATLSEDEARLLLAALVQDYVQ 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 MKASELEQEQEREGSSLDSPRSKRCGNLSTCMLGTYTQDFNKF-----HTFPQTAIGVGA ::::::::::::::: . . .:: . .::. . ... ..: : .: : CCDS31 MKASELEQEQEREGSRIIA--QKRACDTATCVTHRLAGLLSRSGGVVKNNFVPTNVGSKA 70 80 90 100 110 120 130 140 pF1KE3 PGKKRDMSSDLERDHRPHVSMPQNAN :..: CCDS31 FGRRRRDLQA 120 >>CCDS7820.1 CALCB gene_id:797|Hs108|chr11 (127 aa) initn: 258 init1: 220 opt: 435 Z-score: 550.1 bits: 107.5 E(32554): 2.5e-24 Smith-Waterman score: 435; 63.2% identity (78.4% similar) in 125 aa overlap (1-120:1-122) 10 20 30 40 50 60 pF1KE3 MGFQKFSPFLALSILVLLQAGSLHAAPFRSALESSPADPATLSEDEARLLLAALVQDYVQ :::.::::::::::::: :::::.:::::::::::: ::::::...:::::::::::::: CCDS78 MGFRKFSPFLALSILVLYQAGSLQAAPFRSALESSP-DPATLSKEDARLLLAALVQDYVQ 10 20 30 40 50 70 80 90 100 110 pF1KE3 MKASELEQEQEREGSSLDSPRSKRCGNLSTC----MLGTYTQDFNKFHT-FPQTAIGVGA ::::::.:::: .::: : .:: : .:: . : ... . .. : : .: : CCDS78 MKASELKQEQETQGSS--SAAQKRACNTATCVTHRLAGLLSRSGGMVKSNFVPTNVGSKA 60 70 80 90 100 110 120 130 140 pF1KE3 PGKKRDMSSDLERDHRPHVSMPQNAN :..: CCDS78 FGRRRRDLQA 120 141 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 04:57:18 2016 done: Sun Nov 6 04:57:18 2016 Total Scan time: 1.960 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]