FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5158, 148 aa 1>>>pF1KE5158 148 - 148 aa - 148 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8382+/-0.000294; mu= 14.3213+/- 0.018 mean_var=60.8912+/-12.126, 0's: 0 Z-trim(117.2): 20 B-trim: 0 in 0/56 Lambda= 0.164360 statistics sampled from 28996 (29015) to 28996 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.34), width: 16 Scan time: 4.460 The best scores are: opt bits E(85289) NP_000981 (OMIM: 603637) 60S ribosomal protein L27 ( 148) 1019 249.3 1.7e-66 >>NP_000981 (OMIM: 603637) 60S ribosomal protein L27a [H (148 aa) initn: 1019 init1: 1019 opt: 1019 Z-score: 1314.9 bits: 249.3 E(85289): 1.7e-66 Smith-Waterman score: 1019; 100.0% identity (100.0% similar) in 148 aa overlap (1-148:1-148) 10 20 30 40 50 60 pF1KE5 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 70 80 90 100 110 120 130 140 pF1KE5 PVIVKAKFFSRRAEEKIKSVGGACVLVA :::::::::::::::::::::::::::: NP_000 PVIVKAKFFSRRAEEKIKSVGGACVLVA 130 140 148 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:08:57 2016 done: Mon Nov 7 22:08:57 2016 Total Scan time: 4.460 Total Display time: -0.050 Function used was FASTA [36.3.4 Apr, 2011]