FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5564, 424 aa
  1>>>pF1KE5564 424 - 424 aa - 424 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2994+/-0.000894; mu= 18.0759+/- 0.053
 mean_var=78.1319+/-16.304, 0's: 0 Z-trim(107.0): 45  B-trim: 14 in 1/50
 Lambda= 0.145097
 statistics sampled from 9292 (9327) to 9292 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.642), E-opt: 0.2 (0.287), width:  16
 Scan time:  2.060

The best scores are:                                      opt bits E(32554)
CCDS7740.1 SLC22A18 gene_id:5002|Hs108|chr11       ( 424) 2714 577.7 7.2e-165
CCDS81542.1 SLC22A18 gene_id:5002|Hs108|chr11      ( 326) 1605 345.5 4.5e-95


>>CCDS7740.1 SLC22A18 gene_id:5002|Hs108|chr11            (424 aa)
 initn: 2714 init1: 2714 opt: 2714  Z-score: 3073.4  bits: 577.7 E(32554): 7.2e-165
Smith-Waterman score: 2714; 99.8% identity (100.0% similar) in 424 aa overlap (1-424:1-424)

               10        20        30        40        50        60
pF1KE5 MQGARAPRDQGQSPGRMSALGRSSVILLTYVLAATELTCLFMQFSIVPYLSRKLGLDSIA
       :::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MQGARAPRDQGRSPGRMSALGRSSVILLTYVLAATELTCLFMQFSIVPYLSRKLGLDSIA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 FGYLQTTFGVLQLLGGPVFGRFADQRGARAALTLSFLAALALYLLLAAASSPALPGVYLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 FGYLQTTFGVLQLLGGPVFGRFADQRGARAALTLSFLAALALYLLLAAASSPALPGVYLL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 FASRLPGALMHTLPAAQMVITDLSAPEERPAALGRLGLCFGVGVILGSLLGGTLVSAYGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 FASRLPGALMHTLPAAQMVITDLSAPEERPAALGRLGLCFGVGVILGSLLGGTLVSAYGI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 QCPAILAALATLLGAVLSFTCIPASTKGAKTDAQAPLPGGPRASVFDLKAIASLLRLPDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 QCPAILAALATLLGAVLSFTCIPASTKGAKTDAQAPLPGGPRASVFDLKAIASLLRLPDV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 PRIFLVKVASNCPTGLFMVMFSIISMDFFQLEAAQAGYLMSFFGLLQMVTQGLVIGQLSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 PRIFLVKVASNCPTGLFMVMFSIISMDFFQLEAAQAGYLMSFFGLLQMVTQGLVIGQLSS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 HFSEEVLLRASVLVFIVVGLAMAWMSSVFHFCLLVPGLVFSLCTLNVVTDSMLIKAVSTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 HFSEEVLLRASVLVFIVVGLAMAWMSSVFHFCLLVPGLVFSLCTLNVVTDSMLIKAVSTS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 DTGTMLGLCASVQPLLRTLGPTVGGLLYRSFGVPVFGHVQVAINTLVLLVLWRKPMPQRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 DTGTMLGLCASVQPLLRTLGPTVGGLLYRSFGVPVFGHVQVAINTLVLLVLWRKPMPQRK
              370       380       390       400       410       420

           
pF1KE5 DKVR
       ::::
CCDS77 DKVR
           

>>CCDS81542.1 SLC22A18 gene_id:5002|Hs108|chr11           (326 aa)
 initn: 2087 init1: 1582 opt: 1605  Z-score: 1820.4  bits: 345.5 E(32554): 4.5e-95
Smith-Waterman score: 1895; 76.7% identity (76.9% similar) in 424 aa overlap (1-424:1-326)

               10        20        30        40        50        60
pF1KE5 MQGARAPRDQGQSPGRMSALGRSSVILLTYVLAATELTCLFMQFSIVPYLSRKLGLDSIA
       :::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MQGARAPRDQGRSPGRMSALGRSSVILLTYVLAATELTCLFMQFSIVPYLSRKLGLDSIA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 FGYLQTTFGVLQLLGGPVFGRFADQRGARAALTLSFLAALALYLLLAAASSPALPGVYLL
       :::::::::::::::::::::                                       
CCDS81 FGYLQTTFGVLQLLGGPVFGR---------------------------------------
               70        80                                        

              130       140       150       160       170       180
pF1KE5 FASRLPGALMHTLPAAQMVITDLSAPEERPAALGRLGLCFGVGVILGSLLGGTLVSAYGI
                                                                  :
CCDS81 -----------------------------------------------------------I
                                                                   

              190       200       210       220       230       240
pF1KE5 QCPAILAALATLLGAVLSFTCIPASTKGAKTDAQAPLPGGPRASVFDLKAIASLLRLPDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 QCPAILAALATLLGAVLSFTCIPASTKGAKTDAQAPLPGGPRASVFDLKAIASLLRLPDV
             90       100       110       120       130       140  

              250       260       270       280       290       300
pF1KE5 PRIFLVKVASNCPTGLFMVMFSIISMDFFQLEAAQAGYLMSFFGLLQMVTQGLVIGQLSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 PRIFLVKVASNCPTGLFMVMFSIISMDFFQLEAAQAGYLMSFFGLLQMVTQGLVIGQLSS
            150       160       170       180       190       200  

              310       320       330       340       350       360
pF1KE5 HFSEEVLLRASVLVFIVVGLAMAWMSSVFHFCLLVPGLVFSLCTLNVVTDSMLIKAVSTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 HFSEEVLLRASVLVFIVVGLAMAWMSSVFHFCLLVPGLVFSLCTLNVVTDSMLIKAVSTS
            210       220       230       240       250       260  

              370       380       390       400       410       420
pF1KE5 DTGTMLGLCASVQPLLRTLGPTVGGLLYRSFGVPVFGHVQVAINTLVLLVLWRKPMPQRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 DTGTMLGLCASVQPLLRTLGPTVGGLLYRSFGVPVFGHVQVAINTLVLLVLWRKPMPQRK
            270       280       290       300       310       320  

           
pF1KE5 DKVR
       ::::
CCDS81 DKVR
           




424 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 01:52:19 2016 done: Tue Nov  8 01:52:20 2016
 Total Scan time:  2.060 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]