FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1679, 193 aa 1>>>pF1KE1679 193 - 193 aa - 193 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.4099+/-0.000648; mu= 7.8652+/- 0.040 mean_var=175.1299+/-34.706, 0's: 0 Z-trim(118.2): 39 B-trim: 0 in 0/54 Lambda= 0.096916 statistics sampled from 19095 (19138) to 19095 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.853), E-opt: 0.2 (0.588), width: 16 Scan time: 2.450 The best scores are: opt bits E(32554) CCDS7732.1 ASCL2 gene_id:430|Hs108|chr11 ( 193) 1297 191.6 2.6e-49 CCDS31886.1 ASCL1 gene_id:429|Hs108|chr12 ( 236) 423 69.5 1.8e-12 >>CCDS7732.1 ASCL2 gene_id:430|Hs108|chr11 (193 aa) initn: 1297 init1: 1297 opt: 1297 Z-score: 998.8 bits: 191.6 E(32554): 2.6e-49 Smith-Waterman score: 1297; 100.0% identity (100.0% similar) in 193 aa overlap (1-193:1-193) 10 20 30 40 50 60 pF1KE1 MDGGTLPRSAPPAPPVPVGCAARRRPASPELLRCSRRRRPATAETGGGAAAVARRNERER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 MDGGTLPRSAPPAPPVPVGCAARRRPASPELLRCSRRRRPATAETGGGAAAVARRNERER 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 NRVKLVNLGFQALRQHVPHGGASKKLSKVETLRSAVEYIRALQRLLAEHDAVRNALAGGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 NRVKLVNLGFQALRQHVPHGGASKKLSKVETLRSAVEYIRALQRLLAEHDAVRNALAGGL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 RPQAVRPSAPRGPPGTTPVAASPSRASSSPGRGGSSEPGSPRSAYSSDDSGCEGALSPAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 RPQAVRPSAPRGPPGTTPVAASPSRASSSPGRGGSSEPGSPRSAYSSDDSGCEGALSPAE 130 140 150 160 170 180 190 pF1KE1 RELLDFSSWLGGY ::::::::::::: CCDS77 RELLDFSSWLGGY 190 >>CCDS31886.1 ASCL1 gene_id:429|Hs108|chr12 (236 aa) initn: 517 init1: 350 opt: 423 Z-score: 337.2 bits: 69.5 E(32554): 1.8e-12 Smith-Waterman score: 472; 52.0% identity (68.0% similar) in 175 aa overlap (23-190:88-236) 10 20 30 40 pF1KE1 MDGGTLPRSAPPAPPVPVGCAARRRPASPELLRCSRRRRPATAETGGG---- :.: .::::.::.:: .: : CCDS31 QQQQQAPQLRPAADGQPSGGGHKSAPKQVKRQRSSSPELMRCKRR----LNFSGFGYSLP 60 70 80 90 100 110 50 60 70 80 90 100 pF1KE1 ---AAAVARRNERERNRVKLVNLGFQALRQHVPHGGASKKLSKVETLRSAVEYIRALQRL ::::::::::::::::::::: .::.:::.:.:.::.:::::::::::::::::.: CCDS31 QQQPAAVARRNERERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRALQQL 120 130 140 150 160 170 110 120 130 140 150 160 pF1KE1 LAEHDAVRNALAGGLRPQAVRPSAPRGPPGTTPVAASPSRASSSPGRGGSSEPGSPRSAY : ::::: :. .:. . :. ::. ... .: ::: :.: CCDS31 LDEHDAVSAAFQAGV----LSPTI------------SPNYSNDL-----NSMAGSPVSSY 180 190 200 210 170 180 190 pF1KE1 SSDDSGCEGALSPAERELLDFSSWLGGY :::. : ::: :.:::::..:. CCDS31 SSDE-GSYDPLSPEEQELLDFTNWF 220 230 193 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 15:16:28 2016 done: Sun Nov 6 15:16:29 2016 Total Scan time: 2.450 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]