(Circular) (Six-base) MAPSORT of: pFN21AE1730.seq Check: 5307 from: 1 to: 5419 pFN21AE1730 5419 bp With 182 enzymes: SgfI * August 16, 2010 14:50 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3229 278 Size: 53 83 186 936 1693 2468 Fragments arranged by size: 2468 1693 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2762 1937 Size: 825 4594 Acc65I G'GTAC_C Cuts at: 2497 2740 2497 Size: 243 5176 AclI AA'CG_TT Cuts at: 1563 3546 3919 1563 Size: 1983 373 3063 Fragments arranged by size: 3063 1983 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2381 2582 3482 4866 5134 1632 Size: 749 201 900 1384 268 1917 Fragments arranged by size: 1917 1384 900 749 268 201 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5222 AflIII A'CryG_T Cuts at: 1203 4318 5295 1203 Size: 3115 977 1327 Fragments arranged by size: 3115 1327 977 AgeI A'CCGG_T Cuts at: 4250 4250 Size: 5419 AhdI GACnn_n'nnGTC Cuts at: 4148 4148 Size: 5419 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5419 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5419 AlwNI CAG_nnn'CTG Cuts at: 2656 3162 4734 2656 Size: 506 1572 3341 Fragments arranged by size: 3341 1572 506 ApaLI G'TGCA_C Cuts at: 2635 3476 4632 2635 Size: 841 1156 3422 Fragments arranged by size: 3422 1156 841 ApoI r'AATT_y Cuts at: 1493 2728 2954 3106 5215 1493 Size: 1235 226 152 2109 1697 Fragments arranged by size: 2109 1697 1235 226 152 AseI AT'TA_AT Cuts at: 160 1032 3973 160 Size: 872 2941 1606 Fragments arranged by size: 2941 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5419 AvaI C'yCGr_G Cuts at: 1870 1943 2744 1870 Size: 73 801 4545 Fragments arranged by size: 4545 801 73 BaeI ACnnnnGTAyCnnnnnnn_nnnnn' Cuts at: 2481 2514 2481 Size: 33 5386 BamHI G'GATC_C Cuts at: 2749 3116 2749 Size: 367 5052 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2186 2225 2497 2552 2566 Size: 325 217 627 399 39 272 55 14 Cuts at: 2566 2740 4195 618 Size: 174 1455 1842 Fragments arranged by size: 1842 1455 627 399 325 272 217 174 55 39 14 BanII G_rGCy'C Cuts at: 1391 2738 1391 Size: 1347 4072 BbeI G_GCGC'C Cuts at: 2190 2570 2190 Size: 380 5039 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4448 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3610 3644 1903 Size: 34 1673 34 3678 Fragments arranged by size: 3678 1673 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3311 4521 3311 Size: 1210 4209 BclI T'GATC_A Cuts at: 1548 1548 Size: 5419 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4030 136 Size: 107 122 71 631 605 2358 1525 Fragments arranged by size: 2358 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5414 5414 Size: 5419 BlpI GC'TnA_GC Cuts at: 2836 2836 Size: 5419 Bme1580I G_kGCm'C Cuts at: 1790 2639 3480 4636 1790 Size: 849 841 1156 2573 Fragments arranged by size: 2573 1156 849 841 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5419 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3150 4108 442 Size: 416 53 83 399 24 1733 958 1753 Fragments arranged by size: 1753 1733 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5419 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2006 2312 2437 4079 1239 Size: 767 306 125 1642 2579 Fragments arranged by size: 2579 1642 767 306 125 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3544 4409 4707 3544 Size: 865 298 4256 Fragments arranged by size: 4256 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4082 882 Size: 617 2583 2219 Fragments arranged by size: 2583 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3210 493 Size: 711 2006 2702 Fragments arranged by size: 2702 2006 711 BsaBI GATnn'nnATC Cuts at: 5413 5413 Size: 5419 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2187 2451 2567 3226 Size: 53 83 186 936 654 264 116 659 Cuts at: 3226 3608 4243 275 Size: 382 635 1451 Fragments arranged by size: 1451 936 659 654 635 382 264 186 116 83 53 BsaWI w'CCGG_w Cuts at: 3852 4250 4524 4671 5082 3852 Size: 398 274 147 411 4189 Fragments arranged by size: 4189 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2228 2258 1178 Size: 30 165 30 825 30 4339 Fragments arranged by size: 4339 825 165 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 5419 BseYI C'CCAG_C Cuts at: 2068 2086 2349 4622 5118 2068 Size: 18 263 2273 496 2369 Fragments arranged by size: 2369 2273 496 263 18 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2525 2669 1163 Size: 573 789 144 3913 Fragments arranged by size: 3913 789 573 144 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2869 3630 4658 1540 Size: 275 186 868 761 1028 2301 Fragments arranged by size: 2301 1028 868 761 275 186 BsiHKAI G_wGCw'C Cuts at: 2639 3480 3565 4636 2639 Size: 841 85 1071 3422 Fragments arranged by size: 3422 1071 841 85 BsmI GAATG_Cn' Cuts at: 2930 3023 2930 Size: 93 5326 BsmBI CGTCTCn'nnnn_ Cuts at: 2458 2573 2458 Size: 115 5304 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2639 2738 3480 3565 4636 1391 Size: 399 849 99 742 85 1071 2174 Fragments arranged by size: 2174 1071 849 742 399 99 85 BspEI T'CCGG_A Cuts at: 5082 5082 Size: 5419 BspHI T'CATG_A Cuts at: 3308 5038 3308 Size: 1730 3689 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2064 2178 2616 2774 844 Size: 1220 114 438 158 3489 Fragments arranged by size: 3489 1220 438 158 114 BsrBI CCG'CTC Cuts at: 1394 1823 3306 1394 Size: 429 1483 3507 Fragments arranged by size: 3507 1483 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3914 4088 65 Size: 1183 2666 174 1396 Fragments arranged by size: 2666 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2183 4063 4250 1700 Size: 110 373 1880 187 2869 Fragments arranged by size: 2869 1880 373 187 110 BsrGI T'GTAC_A Cuts at: 96 2481 96 Size: 2385 3034 BssHII G'CGCG_C Cuts at: 1925 2009 2011 1925 Size: 84 2 5333 Fragments arranged by size: 5333 84 2 BssSI C'ACGA_G Cuts at: 3479 4491 3479 Size: 1012 4407 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5419 BstBI TT'CG_AA Cuts at: 4223 4223 Size: 5419 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5419 BstYI r'GATC_y Cuts at: 1972 2652 2749 3116 3501 3518 4970 5056 5068 Size: 680 97 367 385 17 1452 86 12 Cuts at: 5068 5414 1972 Size: 346 1977 Fragments arranged by size: 1977 1452 680 385 367 346 97 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 513 Size: 552 939 3928 Fragments arranged by size: 3928 939 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 2287 487 Size: 683 56 1061 3619 Fragments arranged by size: 3619 1061 683 56 BtsI GCAGTG_nn' Cuts at: 2935 3729 3749 2935 Size: 794 20 4605 Fragments arranged by size: 4605 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5419 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5384 DraI TTT'AAA Cuts at: 2723 2723 Size: 5419 DraIII CAC_nnn'GTG Cuts at: 2559 2559 Size: 5419 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4426 809 Size: 507 3110 1802 Fragments arranged by size: 3110 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2106 2199 2866 Size: 54 1425 50 275 18 276 93 667 Cuts at: 2866 3755 5384 8 Size: 889 1629 43 Fragments arranged by size: 1629 1425 889 667 276 275 93 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2866 1537 Size: 275 1054 4090 Fragments arranged by size: 4090 1054 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2066 2146 2318 3349 1353 Size: 713 80 172 1031 3423 Fragments arranged by size: 3423 1031 713 172 80 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4006 4380 4526 387 Size: 1064 138 2417 374 146 1280 Fragments arranged by size: 2417 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2006 2312 2381 2437 2582 3482 4079 Size: 393 374 306 69 56 145 900 597 Cuts at: 4079 4866 5134 1239 Size: 787 268 1524 Fragments arranged by size: 1524 900 787 597 393 374 306 268 145 69 56 EcoNI CCTnn'n_nnAGG Cuts at: 2291 2291 Size: 5419 EcoRI G'AATT_C Cuts at: 2728 3106 2728 Size: 378 5041 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2386 2386 Size: 5419 FspI TGC'GCA Cuts at: 3925 3925 Size: 5419 HaeII r_GCGC'y Cuts at: 1678 2190 2570 2645 4566 1678 Size: 512 380 75 1921 2531 Fragments arranged by size: 2531 1921 512 380 75 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 4060 4092 4134 4166 1373 Size: 32 135 32 2488 32 42 32 2626 Fragments arranged by size: 2626 2488 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2763 3009 669 Size: 988 281 825 246 3079 Fragments arranged by size: 3079 988 825 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5419 HpaI GTT'AAC Cuts at: 3009 3009 Size: 5419 KasI G'GCGC_C Cuts at: 2186 2566 2186 Size: 380 5039 KpnI G_GTAC'C Cuts at: 2501 2744 2501 Size: 243 5176 MfeI C'AATT_G Cuts at: 3018 3018 Size: 5419 MluI A'CGCG_T Cuts at: 5295 5295 Size: 5419 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2481 4533 4717 1305 Size: 1176 2052 184 2007 Fragments arranged by size: 2052 2007 1176 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2201 10 Size: 54 1425 343 369 3228 Fragments arranged by size: 3228 1425 369 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2678 3377 3736 3895 518 Size: 648 1512 699 359 159 2042 Fragments arranged by size: 2042 1512 699 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2442 2835 3512 4660 4905 1606 Size: 836 393 677 1148 245 2120 Fragments arranged by size: 2120 1148 836 677 393 245 NarI GG'CG_CC Cuts at: 2187 2567 2187 Size: 380 5039 NcoI C'CATG_G Cuts at: 513 1065 2004 513 Size: 552 939 3928 Fragments arranged by size: 3928 939 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5419 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5419 NotI GC'GGCC_GC Cuts at: 2866 2866 Size: 5419 NspI r_CATG'y Cuts at: 1132 1229 2777 4322 1132 Size: 97 1548 1545 2229 Fragments arranged by size: 2229 1548 1545 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5419 PciI A'CATG_T Cuts at: 4318 4318 Size: 5419 PflMI CCAn_nnn'nTGG Cuts at: 1108 2415 1108 Size: 1307 4112 PmeI GTTT'AAAC Cuts at: 2723 2723 Size: 5419 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3488 3520 5001 5033 3488 Size: 32 1481 32 3874 Fragments arranged by size: 3874 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5419 PsiI TTA'TAA Cuts at: 2989 2989 Size: 5419 PsrI GAACnnnnnnTACnnnnnnn_nnnnn' Cuts at: 2027 2059 2027 Size: 32 5387 PstI C_TGCA'G Cuts at: 830 2771 830 Size: 1941 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5419 SalI G'TCGA_C Cuts at: 1936 2761 1936 Size: 825 4594 SapI GCTCTTCn'nnn_ Cuts at: 2066 2066 Size: 5419 SbfI CC_TGCA'GG Cuts at: 2771 2771 Size: 5419 ScaI AGT'ACT Cuts at: 3667 5379 3667 Size: 1712 3707 SexAI A'CCwGG_T Cuts at: 2555 2555 Size: 5419 SfcI C'TryA_G Cuts at: 826 1045 2767 3902 4583 4774 826 Size: 219 1722 1135 681 191 1471 Fragments arranged by size: 1722 1471 1135 681 219 191 SfoI GGC'GCC Cuts at: 2188 2568 2188 Size: 380 5039 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5419 SgrAI Cr'CCGG_yG Cuts at: 1700 2183 1700 Size: 483 4936 SmaI CCC'GGG Cuts at: 1872 2746 1872 Size: 874 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3523 4424 4686 820 Size: 197 926 1580 901 262 1553 Fragments arranged by size: 1580 1553 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3210 493 Size: 2717 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5419 SphI G_CATG'C Cuts at: 1132 2777 1132 Size: 1645 3774 SspI AAT'ATT Cuts at: 5 52 3343 5 Size: 47 3291 2081 Fragments arranged by size: 3291 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5419 StyI C'CwwG_G Cuts at: 513 1065 2004 2858 513 Size: 552 939 854 3074 Fragments arranged by size: 3074 939 854 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2078 2213 2447 3446 3463 3616 3801 Size: 1255 498 135 234 999 17 153 185 Cuts at: 3801 4246 325 Size: 445 1498 Fragments arranged by size: 1498 1255 999 498 445 234 185 153 135 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2481 2682 3665 Size: 274 80 33 51 1443 504 201 983 Cuts at: 3665 5377 96 Size: 1712 138 Fragments arranged by size: 1712 1443 983 504 274 201 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2228 2260 5379 5411 2228 Size: 32 3119 32 2236 Fragments arranged by size: 3119 2236 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5419 XbaI T'CTAG_A Cuts at: 2755 2755 Size: 5419 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2209 2209 Size: 5419 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5419 XmaI C'CCGG_G Cuts at: 1870 2744 1870 Size: 874 4545 XmnI GAAnn'nnTTC Cuts at: 3548 3548 Size: 5419 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3227 276 Size: 53 83 186 936 1693 2468 Fragments arranged by size: 2468 1693 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BaeI BamHI BanI BanII BbeI BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DraIII DrdI EaeI EagI EarI EciI Eco57MI EcoNI EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI KasI KpnI MfeI MluI MmeI MscI MslI MspA1I NarI NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PsrI PstI PvuI SalI SapI SbfI ScaI SexAI SfcI SfoI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BbvCI BfrBI BplI Bpu10I BsiWI BstXI BstZ17I Bsu36I EcoICRI EcoO109I EcoRV FseI FspAI NaeI NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspOMI PspXI PvuII RsrII SacI SacII SanDI SfiI SrfI SwaI