Result of FASTA (ccds) for
pFN21AE2339
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2339, 290 aa
1>>>pF1KE2339 290 - 290 aa - 290 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1498+/-0.000833; mu= 15.9008+/- 0.050
mean_var=59.5566+/-12.037, 0's: 0 Z-trim(106.2): 33 B-trim: 149 in 2/49
Lambda= 0.166192
statistics sampled from 8804 (8835) to 8804 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.651), E-opt: 0.2 (0.271), width: 16
Scan time: 1.950
The best scores are: opt bits E(32554)
CCDS7681.1 ECHS1 gene_id:1892|Hs108|chr10 ( 290) 1893 462.1 2.1e-130
CCDS55600.1 ECHDC2 gene_id:55268|Hs108|chr1 ( 292) 480 123.3 2e-28
CCDS6689.1 AUH gene_id:549|Hs108|chr9 ( 339) 450 116.2 3.4e-26
CCDS7084.1 ECHDC3 gene_id:79746|Hs108|chr10 ( 303) 431 111.6 7.2e-25
CCDS33901.1 EHHADH gene_id:1962|Hs108|chr3 ( 723) 379 99.3 8.6e-21
CCDS78409.1 AUH gene_id:549|Hs108|chr9 ( 310) 365 95.8 4.3e-20
CCDS46475.1 HIBCH gene_id:26275|Hs108|chr2 ( 338) 335 88.6 6.7e-18
CCDS2304.1 HIBCH gene_id:26275|Hs108|chr2 ( 386) 335 88.6 7.5e-18
CCDS1721.1 HADHA gene_id:3030|Hs108|chr2 ( 763) 333 88.3 1.9e-17
CCDS14802.1 CDY1 gene_id:9085|Hs108|chrY ( 540) 316 84.2 2.4e-16
CCDS35487.1 CDY1B gene_id:253175|Hs108|chrY ( 540) 316 84.2 2.4e-16
CCDS14789.1 CDY2A gene_id:9426|Hs108|chrY ( 541) 312 83.2 4.6e-16
CCDS35473.1 CDY2B gene_id:203611|Hs108|chrY ( 541) 312 83.2 4.6e-16
CCDS47364.1 CDYL gene_id:9425|Hs108|chr6 ( 412) 303 81.0 1.6e-15
CCDS4491.2 CDYL gene_id:9425|Hs108|chr6 ( 544) 303 81.0 2.1e-15
CCDS14801.1 CDY1 gene_id:9085|Hs108|chrY ( 554) 297 79.6 5.7e-15
CCDS35486.1 CDY1B gene_id:253175|Hs108|chrY ( 554) 297 79.6 5.7e-15
CCDS32493.1 CDYL2 gene_id:124359|Hs108|chr16 ( 506) 292 78.4 1.2e-14
CCDS33014.1 ECH1 gene_id:1891|Hs108|chr19 ( 328) 269 72.8 3.8e-13
CCDS43504.1 ECHDC1 gene_id:55862|Hs108|chr6 ( 301) 267 72.3 4.9e-13
CCDS47471.1 ECHDC1 gene_id:55862|Hs108|chr6 ( 307) 267 72.3 5e-13
CCDS4490.1 ECI2 gene_id:10455|Hs108|chr6 ( 364) 250 68.2 9.8e-12
CCDS43420.2 ECI2 gene_id:10455|Hs108|chr6 ( 394) 250 68.3 1e-11
CCDS571.1 ECHDC2 gene_id:55268|Hs108|chr1 ( 261) 243 66.5 2.4e-11
>>CCDS7681.1 ECHS1 gene_id:1892|Hs108|chr10 (290 aa)
initn: 1893 init1: 1893 opt: 1893 Z-score: 2454.7 bits: 462.1 E(32554): 2.1e-130
Smith-Waterman score: 1893; 100.0% identity (100.0% similar) in 290 aa overlap (1-290:1-290)
10 20 30 40 50 60
pF1KE2 MAALRVLLSCVRGPLRPPVRCPAWRPFASGANFEYIIAEKRGKNNTVGLIQLNRPKALNA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MAALRVLLSCVRGPLRPPVRCPAWRPFASGANFEYIIAEKRGKNNTVGLIQLNRPKALNA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 LCDGLIDELNQALKTFEEDPAVGAIVLTGGDKAFAAGADIKEMQNLSFQDCYSSKFLKHW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LCDGLIDELNQALKTFEEDPAVGAIVLTGGDKAFAAGADIKEMQNLSFQDCYSSKFLKHW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 DHLTQVKKPVIAAVNGYAFGGGCELAMMCDIIYAGEKAQFAQPEILIGTIPGAGGTQRLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 DHLTQVKKPVIAAVNGYAFGGGCELAMMCDIIYAGEKAQFAQPEILIGTIPGAGGTQRLT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 RAVGKSLAMEMVLTGDRISAQDAKQAGLVSKICPVETLVEEAIQCAEKIASNSKIVVAMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 RAVGKSLAMEMVLTGDRISAQDAKQAGLVSKICPVETLVEEAIQCAEKIASNSKIVVAMA
190 200 210 220 230 240
250 260 270 280 290
pF1KE2 KESVNAAFEMTLTEGSKLEKKLFYSTFATDDRKEGMTAFVEKRKANFKDQ
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 KESVNAAFEMTLTEGSKLEKKLFYSTFATDDRKEGMTAFVEKRKANFKDQ
250 260 270 280 290
>>CCDS55600.1 ECHDC2 gene_id:55268|Hs108|chr1 (292 aa)
initn: 420 init1: 246 opt: 480 Z-score: 623.7 bits: 123.3 E(32554): 2e-28
Smith-Waterman score: 480; 34.2% identity (62.3% similar) in 292 aa overlap (4-287:2-289)
10 20 30 40 50
pF1KE2 MAALRVLLSCVRGPLRP-PVRCPAWRPFASGANFEYIIAEKRGKNNTVGLIQLNRPKALN
:::: :. : :: .: : :.:. : . : .. . : .:::.: :
CCDS55 MLRVL--CLLRPWRPLRARGCASDGAAGGS--EIQVRALAGPDQGITEILMNRPSARN
10 20 30 40 50
60 70 80 90 100 110
pF1KE2 ALCDGLIDELNQALKTFEEDPAVGAIVLTGGDKA-FAAGADIKEMQNLSFQDC--YSSKF
:: . ...:: ..: ..:: : .... .: :. : ::::.:: ...: . . ...
CCDS55 ALGNVFVSELLETLAQLREDRQVRVLLFRSGVKGVFCAGADLKEREQMSEAEVGVFVQRL
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE2 LKHWDHLTQVKKPVIAAVNGYAFGGGCELAMMCDIIYAGEKAQFAQPEILIGTIPGAGGT
. .. :.:::..:.:.::: :::. ::. :. .: .. : : .::::::
CCDS55 RGLMNDIAAFPAPTIAAMDGFALGGGLELALACDLRVAASSAVMGLIETTRGLLPGAGGT
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE2 QRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKICPVETLVEEAIQ----CAEKIASN
::: : .: .:: :...:: :.:. .:. :::.. . . : : :..: .
CCDS55 QRLPRCLGVALAKELIFTGRRLSGTEAHVLGLVNHAVAQNEEGDAAYQRARALAQEILPQ
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE2 SKIVVAMAKESVNAAFEMTLTEGSKLEKKLFYSTFATDDRKEGMTAFVEKRKANFKDQ
. :.: ..: ... . :. .. : .: . ... : :: :::.:: ::: .:
CCDS55 APIAVRLGKVAIDRGTEVDIASGMAIEGMCYAQNIPTRDRLEGMAAFREKRTPKFVGK
240 250 260 270 280 290
>>CCDS6689.1 AUH gene_id:549|Hs108|chr9 (339 aa)
initn: 353 init1: 264 opt: 450 Z-score: 583.8 bits: 116.2 E(32554): 3.4e-26
Smith-Waterman score: 450; 32.2% identity (66.3% similar) in 255 aa overlap (43-290:85-339)
20 30 40 50 60 70
pF1KE2 GPLRPPVRCPAWRPFASGANFEYIIAEKRGKNNTVGLIQLNRPKALNALCDGLIDELNQA
.: . .. .:: . :.: .:: :..:
CCDS66 VPAAGGPAPKRGYSSEMKTEDELRVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKA
60 70 80 90 100 110
80 90 100 110 120
pF1KE2 LKTFEEDPAVGAIVLTGG-DKAFAAGADIKEMQNLSFQDC--YSSKFLKHWDHLTQVKKP
. ... : : .:.. . : ::::.:: ..: .. . ::. . .... :
CCDS66 VDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVP
120 130 140 150 160 170
130 140 150 160 170 180
pF1KE2 VIAAVNGYAFGGGCELAMMCDIIYAGEKAQFAQPEILIGTIPGAGGTQRLTRAVGKSLAM
.:::..: :.::: :::. ::: :. .:... : .. :::.:::::: ::.: :::
CCDS66 TIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAK
180 190 200 210 220 230
190 200 210 220 230 240
pF1KE2 EMVLTGDRISAQDAKQAGLVSKICPV----ETLVEEAIQCAEKIASNSKIVVAMAKESVN
:..... .....:: .::.:.. .. ..:.. :... .. ... .:: ..:
CCDS66 ELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAIN
240 250 260 270 280 290
250 260 270 280 290
pF1KE2 AAFEMTLTEGSKLEKKLFYSTFATDDRKEGMTAFVEKRKANFKDQ
..:. :. : .:. . .:. : :: ::. :: ::: .: .
CCDS66 QGMEVDLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPRYKGE
300 310 320 330
>>CCDS7084.1 ECHDC3 gene_id:79746|Hs108|chr10 (303 aa)
initn: 416 init1: 238 opt: 431 Z-score: 559.9 bits: 111.6 E(32554): 7.2e-25
Smith-Waterman score: 431; 32.1% identity (61.8% similar) in 280 aa overlap (10-284:17-295)
10 20 30 40 50
pF1KE2 MAALRVLLSCVR-GPLRP-PVRCPAWRPFASGANFEYIIAEKRGKNNTVGLIQ
:.: :: :.: . : ..: . . . . :
CCDS70 MAAVAVLRAFGASGPMCLRRGPWAQLPARFCSRDPAGAGRRESEPRPTSARQLDGIRNIV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE2 LNRPKALNALCDGLIDELNQALKTFEEDPAVGAIVLTGGDKAFAAGADIKEMQNLSFQDC
:. :: ::: ... :.. . .. . .:.... .:..: :.::. . . .:
CCDS70 LSNPKKRNALSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEEQGRDY
70 80 90 100 110 120
120 130 140 150 160
pF1KE2 YSSKFL---KHWDHLTQVKKPVIAAVNGYAFGGGCELAMMCDIIYAGEKAQFAQPEILIG
.. : : :. . :::: ::: : ..::.:. ::: :..:..:: : . .:
CCDS70 HAEVFQTCSKVMMHIRNHPVPVIAMVNGLAAAAGCQLVASCDIAVASDKSSFATPGVNVG
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE2 TIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKICPVETLVEEAIQCAEK
. .. :. :.::: ...:.::..::. ::::.: ::.::. : : ::... :.:
CCDS70 LFCSTPGVA-LARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIARK
190 200 210 220 230
230 240 250 260 270 280
pF1KE2 IASNSKIVVAMAKESVNAAFEMTLTEGSKLEKKLFYSTFATDDRKEGMTAFVEKRKANFK
::: :. ::...: . . . : . : .. . ...: : .::.:::..:::
CCDS70 IASLSRPVVSLGKATFYKQLPQDLGTAYYLTSQAMVDNLALRDGQEGITAFLQKRKPVWS
240 250 260 270 280 290
290
pF1KE2 DQ
CCDS70 HEPV
300
>>CCDS33901.1 EHHADH gene_id:1962|Hs108|chr3 (723 aa)
initn: 419 init1: 257 opt: 379 Z-score: 486.7 bits: 99.3 E(32554): 8.6e-21
Smith-Waterman score: 379; 35.1% identity (66.5% similar) in 194 aa overlap (37-230:1-189)
10 20 30 40 50 60
pF1KE2 LLSCVRGPLRPPVRCPAWRPFASGANFEYIIAEKRGKNNTVGLIQLNRPKALNALCDGLI
.:: .:...::.: : .::. :.
CCDS33 MAEYTRLHNALALIRLRNPP-VNAISTTLL
10 20
70 80 90 100 110 120
pF1KE2 DELNQALKTFEEDPAVGAIVLTGGDKAFAAGADIKEMQNLSFQDCYSSKFLKHWDHLTQV
.....:. : .. :::. :.. :.:::::. ..: .. . . :.. .
CCDS33 RDIKEGLQKAVIDHTIKAIVICGAEGKFSAGADIR---GFSAPRTFGLTLGHVVDEIQRN
30 40 50 60 70 80
130 140 150 160 170 180
pF1KE2 KKPVIAAVNGYAFGGGCELAMMCDIIYAGEKAQFAQPEILIGTIPGAGGTQRLTRAVGKS
.:::.::..:.::::: :::. : : .:: . ::. .: .::: ::: : : .:
CCDS33 EKPVVAAIQGMAFGGGLELALGCHYRIAHAEAQVGLPEVTLGLLPGARGTQLLPRLTGVP
90 100 110 120 130 140
190 200 210 220 230 240
pF1KE2 LAMEMVLTGDRISAQDAKQAGLVSKICPVETLVEEAIQCAEKIASNSKIVVAMAKESVNA
:.... .: :: :..: . :...:. . :::::. :....
CCDS33 AALDLITSGRRILADEALKLGILDKVVNSDP-VEEAIRFAQRVSDQPLESRRLCNKPIQS
150 160 170 180 190 200
250 260 270 280 290
pF1KE2 AFEMTLTEGSKLEKKLFYSTFATDDRKEGMTAFVEKRKANFKDQ
CCDS33 LPNMDSIFSEALLKMRRQHPGCLAQEACVRAVQAAVQYPYEVGIKKEEELFLYLLQSGQA
210 220 230 240 250 260
>>CCDS78409.1 AUH gene_id:549|Hs108|chr9 (310 aa)
initn: 305 init1: 254 opt: 365 Z-score: 474.2 bits: 95.8 E(32554): 4.3e-20
Smith-Waterman score: 365; 36.1% identity (70.5% similar) in 166 aa overlap (129-290:145-310)
100 110 120 130 140 150
pF1KE2 DIKEMQNLSFQDCYSSKFLKHWDHLTQVKKPVIAAVNGYAFGGGCELAMMCDIIYAGEKA
:.:::..: :.::: :::. ::: :. .:
CCDS78 VDALKSDKKVRTIIIRSEVPGIFCAANLPVPTIAAIDGLALGGGLELALACDIRVAASSA
120 130 140 150 160 170
160 170 180 190 200 210
pF1KE2 QFAQPEILIGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKICPV---
... : .. :::.:::::: ::.: ::: :..... .....:: .::.:..
CCDS78 KMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQE
180 190 200 210 220 230
220 230 240 250 260 270
pF1KE2 -ETLVEEAIQCAEKIASNSKIVVAMAKESVNAAFEMTLTEGSKLEKKLFYSTFATDDRKE
.. ..:.. :... .. ... .:: ..: ..:. :. : .:. . .:. : :: :
CCDS78 GDAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLE
240 250 260 270 280 290
280 290
pF1KE2 GMTAFVEKRKANFKDQ
:. :: ::: .: .
CCDS78 GLLAFKEKRPPRYKGE
300 310
>>CCDS46475.1 HIBCH gene_id:26275|Hs108|chr2 (338 aa)
initn: 311 init1: 143 opt: 335 Z-score: 434.8 bits: 88.6 E(32554): 6.7e-18
Smith-Waterman score: 337; 33.0% identity (63.1% similar) in 233 aa overlap (34-260:36-255)
10 20 30 40 50 60
pF1KE2 LRVLLSCVRGPLRPPVRCPAWRPFASGANFEYIIAEKRGKNNTVGLIQLNRPKALNALCD
: .. ::.: .:.: ::::: ::::
CCDS46 MWRLMSRFNAFKRTNTILHHLRMSKHTDAAEEVLLEKKG---CTGVITLNRPKFLNALTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 GLIDELNQALKTFEEDPAVGAIVLTG-GDKAFAAGADIKEMQNL-SFQDCYSSKFLKHWD
..: .. :: .:.:: . :.. : : ::: ::.::. ... . .. . :...
CCDS46 NMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFREEY
70 80 90 100 110 120
130 140 150 160 170
pF1KE2 HLTQV----KKPVIAAVNGYAFGGGCELAMMCDIIYAGEKAQFAQPEILIGTIPGAGGTQ
:... .:: .: ..: ..::: :.. .. : :: ::.:: :: .: .::
CCDS46 MLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGY
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE2 RLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKICPVETLVEEAIQCAEKIASNSKIVV
: : :: :.. ..::: :....:. .::..... : : :. . .: .:
CCDS46 FLPRLQGK-LGYFLALTGFRLKGRDVYRAGIATHFVDSEKL---AMLEEDLLALKSP---
190 200 210 220 230
240 250 260 270 280 290
pF1KE2 AMAKESVNAAFEMTLTEGSKLEKKLFYSTFATDDRKEGMTAFVEKRKANFKDQ
.::.. ...: :: ::...
CCDS46 --SKENIASVLENYHTE-SKIDRDKSFILEEHMDKINSCFSANTVEEIIENLQQDGSSFA
240 250 260 270 280 290
>>CCDS2304.1 HIBCH gene_id:26275|Hs108|chr2 (386 aa)
initn: 311 init1: 143 opt: 335 Z-score: 433.9 bits: 88.6 E(32554): 7.5e-18
Smith-Waterman score: 337; 33.0% identity (63.1% similar) in 233 aa overlap (34-260:36-255)
10 20 30 40 50 60
pF1KE2 LRVLLSCVRGPLRPPVRCPAWRPFASGANFEYIIAEKRGKNNTVGLIQLNRPKALNALCD
: .. ::.: .:.: ::::: ::::
CCDS23 MWRLMSRFNAFKRTNTILHHLRMSKHTDAAEEVLLEKKG---CTGVITLNRPKFLNALTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 GLIDELNQALKTFEEDPAVGAIVLTG-GDKAFAAGADIKEMQNL-SFQDCYSSKFLKHWD
..: .. :: .:.:: . :.. : : ::: ::.::. ... . .. . :...
CCDS23 NMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFREEY
70 80 90 100 110 120
130 140 150 160 170
pF1KE2 HLTQV----KKPVIAAVNGYAFGGGCELAMMCDIIYAGEKAQFAQPEILIGTIPGAGGTQ
:... .:: .: ..: ..::: :.. .. : :: ::.:: :: .: .::
CCDS23 MLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGY
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE2 RLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKICPVETLVEEAIQCAEKIASNSKIVV
: : :: :.. ..::: :....:. .::..... : : :. . .: .:
CCDS23 FLPRLQGK-LGYFLALTGFRLKGRDVYRAGIATHFVDSEKL---AMLEEDLLALKSP---
190 200 210 220 230
240 250 260 270 280 290
pF1KE2 AMAKESVNAAFEMTLTEGSKLEKKLFYSTFATDDRKEGMTAFVEKRKANFKDQ
.::.. ...: :: ::...
CCDS23 --SKENIASVLENYHTE-SKIDRDKSFILEEHMDKINSCFSANTVEEIIENLQQDGSSFA
240 250 260 270 280 290
>>CCDS1721.1 HADHA gene_id:3030|Hs108|chr2 (763 aa)
initn: 271 init1: 182 opt: 333 Z-score: 426.8 bits: 88.3 E(32554): 1.9e-17
Smith-Waterman score: 333; 34.2% identity (66.8% similar) in 184 aa overlap (42-218:44-225)
20 30 40 50 60 70
pF1KE2 RGPLRPPVRCPAWRPFASGANFEYIIAEKRGKNNTVGLIQLNRPKA-LNALCDGLIDELN
: .. :.....: :.. .:.: : .:..
CCDS17 SAFRILRSRGYICRNFTGSSALLTRTHINYGVKGDVAVVRINSPNSKVNTLSKELHSEFS
20 30 40 50 60 70
80 90 100 110 120
pF1KE2 QAL-KTFEEDPAVGAIVLTGGDKAFAAGADIKEMQNL-SFQDC--YSSKFLKHWDHLTQV
... . . : .:..... : :::::. . ..:. :.. . ..: .
CCDS17 EVMNEIWASDQIRSAVLISSKPGCFIAGADINMLAACKTLQEVTQLSQEAQRIVEKLEKS
80 90 100 110 120 130
130 140 150 160 170 180
pF1KE2 KKPVIAAVNGYAFGGGCELAMMCD--IIYAGEKAQFAQPEILIGTIPGAGGTQRLTRAVG
::..::.:: .::: :.:. :. : .:. .. ::.:.:..::::::::: . ::
CCDS17 TKPIVAAINGSCLGGGLEVAISCQYRIATKDRKTVLGTPEVLLGALPGAGGTQRLPKMVG
140 150 160 170 180 190
190 200 210 220 230 240
pF1KE2 KSLAMEMVLTGDRISAQDAKQAGLVSKICPVETLVEEAIQCAEKIASNSKIVVAMAKESV
:..:.::: : :. ::. :::... :: :
CCDS17 VPAALDMMLTGRSIRADRAKKMGLVDQL--VEPLGPGLKPPEERTIEYLEEVAITFAKGL
200 210 220 230 240 250
250 260 270 280 290
pF1KE2 NAAFEMTLTEGSKLEKKLFYSTFATDDRKEGMTAFVEKRKANFKDQ
CCDS17 ADKKISPKRDKGLVEKLTAYAMTIPFVRQQVYKKVEEKVRKQTKGLYPAPLKIIDVVKTG
260 270 280 290 300 310
>>CCDS14802.1 CDY1 gene_id:9085|Hs108|chrY (540 aa)
initn: 277 init1: 277 opt: 316 Z-score: 407.1 bits: 84.2 E(32554): 2.4e-16
Smith-Waterman score: 316; 24.5% identity (62.3% similar) in 265 aa overlap (29-287:279-540)
10 20 30 40 50
pF1KE2 MAALRVLLSCVRGPLRPPVRCPAWRPFASGANFEYIIAEKRGKNNTVGLIQLNRPKAL
:..... :...: ... . .. .:
CCDS14 RVKGGQRNITDDSRDQPFIKKMHFTIRLTESASTYRDIVVKK--EDGFTQIVLSTRSTEK
250 260 270 280 290 300
60 70 80 90 100 110
pF1KE2 NALCDGLIDELNQALKTFEEDPAVGAIVLTGGDKAFAAGAD----IKEMQN-LSFQDCYS
::: .: :. .::.. : . ...... ..: : : .:...: . .
CCDS14 NALNTEVIKEIVNALNSAAADDS-KLVLFSAAGSVFCCGLDFGYFVKHLRNNRNTASLEM
310 320 330 340 350 360
120 130 140 150 160 170
pF1KE2 SKFLKHW-DHLTQVKKPVIAAVNGYAFGGGCELAMMCDIIYAGEKAQFAQPEILIGTIPG
.:.. . . : :::....::: :.: : . .::...:.::: : : .: :
CCDS14 VDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPD
370 380 390 400 410 420
180 190 200 210 220 230
pF1KE2 AGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKICPVETLVEEAIQCAEKIASN
. .. . . .::. : ::...: ...:..: ::::.. . :...:.. ...::
CCDS14 GCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASY
430 440 450 460 470 480
240 250 260 270 280 290
pF1KE2 SKIVVAMAKESVNAAFEMTLTEGSKLEKKLFYSTFATDDRKEGMTAFVEKRKANFKDQ
. ::. : : ... : .... : ... . ... . :.: .::.. .:
CCDS14 NPIVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKYVENKIDEF
490 500 510 520 530 540
290 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 15:17:26 2016 done: Sun Nov 6 15:17:27 2016
Total Scan time: 1.950 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]