FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7566, 277 aa 1>>>pF1KB7566 277 - 277 aa - 277 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.0360+/-0.000324; mu= 9.5432+/- 0.020 mean_var=194.0020+/-40.056, 0's: 0 Z-trim(121.9): 247 B-trim: 569 in 1/54 Lambda= 0.092081 statistics sampled from 38911 (39193) to 38911 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.789), E-opt: 0.2 (0.46), width: 16 Scan time: 8.110 The best scores are: opt bits E(85289) NP_796374 (OMIM: 605955) homeobox protein Nkx-6.2 ( 277) 1889 262.6 5.8e-70 XP_016872278 (OMIM: 605955) PREDICTED: homeobox pr ( 277) 1884 261.9 9.2e-70 NP_006159 (OMIM: 602563) homeobox protein Nkx-6.1 ( 367) 969 140.5 4.3e-33 XP_016868632 (OMIM: 610772) PREDICTED: homeobox pr ( 265) 751 111.4 1.8e-24 NP_061815 (OMIM: 142992,612109) homeobox protein H ( 348) 316 53.8 5.4e-07 NP_002439 (OMIM: 106600,142983,189500,608874) home ( 303) 292 50.5 4.5e-06 NP_068777 (OMIM: 142995) H2.0-like homeobox protei ( 488) 287 50.1 9.7e-06 NP_005512 (OMIM: 186770) T-cell leukemia homeobox ( 330) 282 49.2 1.2e-05 NP_005506 (OMIM: 142994,176450) motor neuron and p ( 401) 270 47.7 4.1e-05 NP_004089 (OMIM: 269160,600035) homeobox protein E ( 252) 263 46.5 5.8e-05 NP_001182446 (OMIM: 186770) T-cell leukemia homeob ( 257) 262 46.4 6.4e-05 NP_001099044 (OMIM: 613380) homeobox protein HMX3 ( 357) 261 46.5 8.7e-05 NP_001158727 (OMIM: 142994,176450) motor neuron an ( 189) 256 45.5 9.2e-05 XP_005269800 (OMIM: 600647) PREDICTED: homeobox pr ( 273) 257 45.8 0.00011 NP_005510 (OMIM: 600647) homeobox protein HMX2 [Ho ( 273) 257 45.8 0.00011 NP_066305 (OMIM: 604640) T-cell leukemia homeobox ( 291) 257 45.8 0.00011 NP_001180 (OMIM: 602183,613330) homeobox protein N ( 333) 257 45.9 0.00012 NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 253 45.2 0.00015 NP_004088 (OMIM: 600034) homeobox protein EMX1 [Ho ( 290) 252 45.2 0.00017 NP_006483 (OMIM: 136760,606014) homeobox protein a ( 343) 252 45.2 0.00019 XP_011538046 (OMIM: 186770) PREDICTED: T-cell leuk ( 342) 251 45.1 0.00021 NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 249 44.8 0.00025 NP_001129743 (OMIM: 217095,611770) homeobox protei ( 301) 248 44.6 0.00026 NP_067545 (OMIM: 603260) homeobox protein BarH-lik ( 254) 246 44.3 0.00028 NP_038463 (OMIM: 601881,611038) retinal homeobox p ( 346) 248 44.7 0.00028 NP_689781 (OMIM: 610772) homeobox protein Nkx-6.3 ( 135) 241 43.3 0.00029 NP_057254 (OMIM: 604240) T-cell leukemia homeobox ( 284) 246 44.4 0.0003 NP_149416 (OMIM: 607808) homeobox protein Nkx-2.4 ( 354) 247 44.6 0.00031 XP_011530999 (OMIM: 600034) PREDICTED: homeobox pr ( 119) 239 43.0 0.00032 NP_000200 (OMIM: 125853,260370,600733,606176,60639 ( 283) 244 44.1 0.00036 NP_002720 (OMIM: 604420) hematopoietically-express ( 270) 243 43.9 0.00038 NP_005211 (OMIM: 104510,190320,600525) homeobox pr ( 287) 241 43.7 0.00048 XP_016867454 (OMIM: 603354) PREDICTED: homeobox pr ( 203) 235 42.7 0.00066 XP_016867453 (OMIM: 603354) PREDICTED: homeobox pr ( 204) 235 42.7 0.00066 NP_001418 (OMIM: 131310) homeobox protein engraile ( 333) 238 43.4 0.00069 NP_005212 (OMIM: 220600,600028) homeobox protein D ( 289) 236 43.0 0.00076 NP_004396 (OMIM: 126255) homeobox protein DLX-2 [H ( 328) 236 43.1 0.00082 NP_008827 (OMIM: 142950) homeobox protein Hox-A7 [ ( 230) 233 42.5 0.00086 NP_835221 (OMIM: 600029) homeobox protein DLX-1 is ( 255) 233 42.6 0.00092 NP_001476 (OMIM: 601135) homeobox protein GBX-2 is ( 348) 235 43.0 0.00094 NP_001092304 (OMIM: 603354) homeobox protein GBX-1 ( 363) 235 43.0 0.00097 NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 232 42.5 0.001 NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 232 42.5 0.001 NP_002440 (OMIM: 123101,168500,168550,604757) home ( 267) 232 42.5 0.001 NP_001243268 (OMIM: 602041) homeobox protein Nkx-3 ( 159) 228 41.7 0.0011 NP_036608 (OMIM: 604295) ventral anterior homeobox ( 290) 232 42.5 0.0011 NP_001925 (OMIM: 601911,616788) homeobox protein D ( 168) 228 41.7 0.0011 XP_016879780 (OMIM: 601911,616788) PREDICTED: home ( 168) 228 41.7 0.0011 XP_011538047 (OMIM: 186770) PREDICTED: T-cell leuk ( 269) 231 42.3 0.0011 XP_005250242 (OMIM: 220600,600028) PREDICTED: home ( 161) 227 41.5 0.0012 >>NP_796374 (OMIM: 605955) homeobox protein Nkx-6.2 [Hom (277 aa) initn: 1889 init1: 1889 opt: 1889 Z-score: 1377.0 bits: 262.6 E(85289): 5.8e-70 Smith-Waterman score: 1889; 100.0% identity (100.0% similar) in 277 aa overlap (1-277:1-277) 10 20 30 40 50 60 pF1KB7 MDTNRPGAFVLSSAPLAALHNMAEMKTSLFPYALQGPAGFKAPALGGLGAQLPLGTPHGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_796 MDTNRPGAFVLSSAPLAALHNMAEMKTSLFPYALQGPAGFKAPALGGLGAQLPLGTPHGI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 SDILGRPVGAAGGGLLGGLPRLNGLASSAGVYFGPAAAVARGYPKPLAELPGRPPIFWPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_796 SDILGRPVGAAGGGLLGGLPRLNGLASSAGVYFGPAAAVARGYPKPLAELPGRPPIFWPG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 VVQGAPWRDPRLAGPAPAGGVLDKDGKKKHSRPTFSGQQIFALEKTFEQTKYLAGPERAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_796 VVQGAPWRDPRLAGPAPAGGVLDKDGKKKHSRPTFSGQQIFALEKTFEQTKYLAGPERAR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB7 LAYSLGMTESQVKVWFQNRRTKWRKRHAAEMASAKKKQDSDAEKLKVGGSDAEDDDEYNR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_796 LAYSLGMTESQVKVWFQNRRTKWRKRHAAEMASAKKKQDSDAEKLKVGGSDAEDDDEYNR 190 200 210 220 230 240 250 260 270 pF1KB7 PLDPNSDDEKITRLLKKHKPSNLALVSPCGGGAGDAL ::::::::::::::::::::::::::::::::::::: NP_796 PLDPNSDDEKITRLLKKHKPSNLALVSPCGGGAGDAL 250 260 270 >>XP_016872278 (OMIM: 605955) PREDICTED: homeobox protei (277 aa) initn: 1884 init1: 1884 opt: 1884 Z-score: 1373.4 bits: 261.9 E(85289): 9.2e-70 Smith-Waterman score: 1884; 99.6% identity (100.0% similar) in 277 aa overlap (1-277:1-277) 10 20 30 40 50 60 pF1KB7 MDTNRPGAFVLSSAPLAALHNMAEMKTSLFPYALQGPAGFKAPALGGLGAQLPLGTPHGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MDTNRPGAFVLSSAPLAALHNMAEMKTSLFPYALQGPAGFKAPALGGLGAQLPLGTPHGI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 SDILGRPVGAAGGGLLGGLPRLNGLASSAGVYFGPAAAVARGYPKPLAELPGRPPIFWPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SDILGRPVGAAGGGLLGGLPRLNGLASSAGVYFGPAAAVARGYPKPLAELPGRPPIFWPG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 VVQGAPWRDPRLAGPAPAGGVLDKDGKKKHSRPTFSGQQIFALEKTFEQTKYLAGPERAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 VVQGAPWRDPRLAGPAPAGGVLDKDGKKKHSRPTFSGQQIFALEKTFEQTKYLAGPERAR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB7 LAYSLGMTESQVKVWFQNRRTKWRKRHAAEMASAKKKQDSDAEKLKVGGSDAEDDDEYNR ::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::: XP_016 LAYSLGMTESQVKVWFQNRRTKWRKRHAVEMASAKKKQDSDAEKLKVGGSDAEDDDEYNR 190 200 210 220 230 240 250 260 270 pF1KB7 PLDPNSDDEKITRLLKKHKPSNLALVSPCGGGAGDAL ::::::::::::::::::::::::::::::::::::: XP_016 PLDPNSDDEKITRLLKKHKPSNLALVSPCGGGAGDAL 250 260 270 >>NP_006159 (OMIM: 602563) homeobox protein Nkx-6.1 [Hom (367 aa) initn: 1064 init1: 699 opt: 969 Z-score: 715.1 bits: 140.5 E(85289): 4.3e-33 Smith-Waterman score: 1007; 58.0% identity (71.3% similar) in 300 aa overlap (31-274:63-355) 10 20 30 40 50 pF1KB7 MDTNRPGAFVLSSAPLAALHNMAEMKTSLFPYALQGPAGFKAPALGGLGA------QLPL : . ..:.:.: :: :::.. :: NP_006 TPLYPAAYPPLPAGPPSSSSSSSSSSSPSPPLGTHNPGGLKPPATGGLSSLGSPPQQLSA 40 50 60 70 80 90 60 70 pF1KB7 GTPHGISDILGRPV-----GAA------GG------------------------------ .:::::.:::.:: ::: .: NP_006 ATPHGINDILSRPSMPVASGAALPSASPSGSSSSSSSSASASSASAAAAAAAAAAAAASS 100 110 120 130 140 150 80 90 100 110 120 pF1KB7 --GLLGGLPRLNGLASSA---GVYFGPAAAV--ARG-YPKPLAELPGRPPIFWPGVVQGA :::.::::...:. :.::.:.::. : : ::::::::::: :::::::.:. NP_006 PAGLLAGLPRFSSLSPPPPPPGLYFSPSAAAVAAVGRYPKPLAELPGRTPIFWPGVMQSP 160 170 180 190 200 210 130 140 150 160 170 180 pF1KB7 PWRDPRLAGPAPAGGVL-DKDGKKKHSRPTFSGQQIFALEKTFEQTKYLAGPERARLAYS :::: ::: :..: :::::.::.::::::::::::::::::::::::::::::::: NP_006 PWRDARLACTPHQGSILLDKDGKRKHTRPTFSGQQIFALEKTFEQTKYLAGPERARLAYS 220 230 240 250 260 270 190 200 210 220 230 240 pF1KB7 LGMTESQVKVWFQNRRTKWRKRHAAEMASAKKKQDSDAEKLKVGGSDAEDDDEYNRPLDP :::::::::::::::::::::.::::::.:::::::..:.:: .. . :.::.::.:::: NP_006 LGMTESQVKVWFQNRRTKWRKKHAAEMATAKKKQDSETERLKGASENEEEDDDYNKPLDP 280 290 300 310 320 330 250 260 270 pF1KB7 NSDDEKITRLLKKHKPSNLALVSPCGGGAGDAL ::::::::.:::::: :. :::.: NP_006 NSDDEKITQLLKKHKSSS-------GGGGGLLLHASEPESSS 340 350 360 >>XP_016868632 (OMIM: 610772) PREDICTED: homeobox protei (265 aa) initn: 724 init1: 401 opt: 751 Z-score: 560.2 bits: 111.4 E(85289): 1.8e-24 Smith-Waterman score: 790; 51.5% identity (72.0% similar) in 264 aa overlap (1-259:1-252) 10 20 30 40 50 60 pF1KB7 MDTNRPGAFVLSSAPLAALHNMAEMKTSLFPYALQGPAGFKAPALGGLGAQLPLGTPHGI :..: :.:.:...::: .. :::. . :..:. .: . ::: :: :::::: XP_016 MESNLQGTFLLNNTPLA---QFPEMKAPVCQYSVQN--SFYKLSPPGLGPQLAAGTPHGI 10 20 30 40 50 70 80 90 100 110 pF1KB7 SDILGRPVGAAGGGLLGGLPRLNGLA--SSAGVYFGPAAAVARGYPKPLAELPGRPPIFW .:::.:::.: ...::.: :.. :.. :: :::..: .. .. : : : : : XP_016 TDILSRPVAAPNNSLLSGYPHVAGFGGLSSQGVYYSPQVG---NFSKAGNEYPTRTRNCW 60 70 80 90 100 110 120 130 140 150 160 170 pF1KB7 PGVVQGAPWRDPRLAGPAPAGGVLDKDGKKKHSRPTFSGQQIFALEKTFEQTKYLAGPER . : :: : . .: . :. ::::.::::.:.:::::::::::::::::::: XP_016 ADT--GQDWRGGRQCSNTP-DPLSDSIHKKKHTRPTFTGHQIFALEKTFEQTKYLAGPER 120 130 140 150 160 180 190 200 210 220 230 pF1KB7 ARLAYSLGMTESQVKVWFQNRRTKWRKRHAAEMASAKKKQDSDAEKLKVGGSDA---EDD :::::::::::::::::::::::::::. : : .:. . . : .::. : ..: XP_016 ARLAYSLGMTESQVKVWFQNRRTKWRKKSALEPSSSTPRAPGGAGA-GAGGDRAPSENED 170 180 190 200 210 220 240 250 260 270 pF1KB7 DEYNRPLDPNSDDEKITRLLKKHKPSNLALVSPCGGGAGDAL ::::.::::.:::::: ::.::. XP_016 DEYNKPLDPDSDDEKIRLLLRKHRAAFSVLSLGAHSV 230 240 250 260 >>NP_061815 (OMIM: 142992,612109) homeobox protein HMX1 (348 aa) initn: 301 init1: 277 opt: 316 Z-score: 246.5 bits: 53.8 E(85289): 5.4e-07 Smith-Waterman score: 325; 40.2% identity (56.9% similar) in 204 aa overlap (36-214:76-269) 10 20 30 40 50 60 pF1KB7 PGAFVLSSAPLAALHNMAEMKTSLFPYALQGPAGF-KAPALGGLGAQLPLGT--PHGISD ::.: .: :: : :: : :: : : NP_061 EEDDDDPEDEDAEQARRRRLQRRRQLLAGTGPGGEARARALLGPGA-LGLGPRPPPGP-- 50 60 70 80 90 100 70 80 90 100 110 120 pF1KB7 ILGRPVGAAGGGLLGGLPRLNGLASSAGVYFGPAAAVARGYPKPLAELPGRPPIFWP-GV : : . . :: :: .: . : ..: .. : :. :. :: :: : NP_061 --GPPFALGCGGAARWYPRAHG---GYGGGLSPDTS-DRDSPETGEEM-GRAEGAWPRGP 110 120 130 140 150 130 140 150 160 pF1KB7 VQGAPWRDP-RLA--GPA------------PA------GGVLDKDGKKKHSRPTFSGQQI :: :. .:: ::: :: ::: :.::..: .:: .:. NP_061 GPGAVQREAAELAARGPAAGTEEASELAEVPAAAGETRGGVGVGGGRKKKTRTVFSRSQV 160 170 180 190 200 210 170 180 190 200 210 220 pF1KB7 FALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKRHAAEMASAKKKQDS : ::.::. .::.. ::: :: :: .::.:::.::::::.::... :::. .: NP_061 FQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAELEAASLSPPG 220 230 240 250 260 270 230 240 250 260 270 pF1KB7 DAEKLKVGGSDAEDDDEYNRPLDPNSDDEKITRLLKKHKPSNLALVSPCGGGAGDAL NP_061 AQRLVRVPVLYHESPPAAAAAGPPATLPFPLAPAAPAPPPPLLGFSGALAYPLAAFPAAA 280 290 300 310 320 330 >>NP_002439 (OMIM: 106600,142983,189500,608874) homeobox (303 aa) initn: 283 init1: 183 opt: 292 Z-score: 230.0 bits: 50.5 E(85289): 4.5e-06 Smith-Waterman score: 292; 30.3% identity (60.6% similar) in 221 aa overlap (6-215:33-239) 10 20 30 pF1KB7 MDTNRPGAFVLSSAPLAALHNMAEMKTS--LFPYA :.: . ..: ..: .. :. :.: :.:.. NP_002 PAADMTSLPLGVKVEDSAFGKPAGGGAGQAPSAAAATAAAMGADEEGAKPKVSPSLLPFS 10 20 30 40 50 60 40 50 60 70 80 90 pF1KB7 LQG-PAGFKAPAL--GGLGAQLPLGTPHGISDILGRPVGAAGGGLLGGLPRLNGLASSAG ... : . :. ..:. . . . : .. :: : :. :. . :: : : .: NP_002 VEALMADHRKPGAKESALAPSEGVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSVGG 70 80 90 100 110 120 100 110 120 130 140 pF1KB7 VYFGPAAAVARGYPKPLAELPGRPPIFWPGVVQGAPW-RDPRLAGP-----APAGGVLDK . : :... :: : .: . .:: ..::.. : .: . .: : NP_002 LLKLPEDALVK------AESPEKP--------ERTPWMQSPRFSPPPARRLSPPACTLRK 130 140 150 160 150 160 170 180 190 200 pF1KB7 DGKKKHSRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWR ... : :. :..:::. :.: .::. :::... ::..::.:::.::::::.: . NP_002 HKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAK 170 180 190 200 210 220 210 220 230 240 250 260 pF1KB7 KRHAAEMASAKKKQDSDAEKLKVGGSDAEDDDEYNRPLDPNSDDEKITRLLKKHKPSNLA . . ::. . : NP_002 RLQEAELEKLKMAAKPMLPPAAFGLSFPLGGPAAVAAAAGASLYGASGPFQRAALPVAPV 230 240 250 260 270 280 >>NP_068777 (OMIM: 142995) H2.0-like homeobox protein [H (488 aa) initn: 273 init1: 245 opt: 287 Z-score: 224.0 bits: 50.1 E(85289): 9.7e-06 Smith-Waterman score: 287; 38.6% identity (59.7% similar) in 176 aa overlap (75-240:203-365) 50 60 70 80 90 100 pF1KB7 LGGLGAQLPLGTPHGISDILGRPVGAAGGGLLGGLP---RLNGLASSAGVYFGPAAAVAR : :: : .:.:: ::: .:. . . NP_068 DLKFGIDRILSAEFDPKVKEGNTLRDLTSLLTGGRPAGVHLSGLQPSAGQFFASLDPINE 180 190 200 210 220 230 110 120 130 140 150 pF1KB7 GYPKPLAELPGRPPIFWPGVVQGAPWRDPRLAGPAPAGGVLDKDG-------KKKHSRPT . :. : . : . :: ..: . :: .:: :: :.. :: . NP_068 A-SAILSPLNSNPR----NSVQHQ-FQDT-FPGPY---AVLTKDTMPQTYKRKRSWSRAV 240 250 260 270 280 160 170 180 190 200 210 pF1KB7 FSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKRHAAEMASA ::. : .::: :: ::.. :.: .:: ::.:..:::::::::: :: ::. : :.: NP_068 FSNLQRKGLEKRFEIQKYVTKPDRKQLAAMLGLTDAQVKVWFQNRRMKW--RHSKE-AQA 290 300 310 320 330 220 230 240 250 260 270 pF1KB7 KKKQDSDAEKLKVGGSDAEDDDEYNRPLDPNSDDEKITRLLKKHKPSNLALVSPCGGGAG .: .:..: . ::. : : .. .: NP_068 QKDKDKEAGEKPSGGAPAADGEQDERSPSRSEGEAESESSDSESLDMAPSDTERTEGSER 340 350 360 370 380 390 >>NP_005512 (OMIM: 186770) T-cell leukemia homeobox prot (330 aa) initn: 311 init1: 248 opt: 282 Z-score: 222.4 bits: 49.2 E(85289): 1.2e-05 Smith-Waterman score: 359; 41.1% identity (59.9% similar) in 202 aa overlap (32-218:74-270) 10 20 30 40 50 60 pF1KB7 DTNRPGAFVLSSAPLAALHNMAEMKTSLFPYALQGPAGFKAPALGGLGAQL-PLGTPHGI :. ::.: .:: :: . .. :: ... NP_005 EYGLGCLVGGAYTYGGGGSAAATGAGGAGAYGTGGPGGPGGPAGGGGACSMGPLTGSYNV 50 60 70 80 90 100 70 80 90 100 110 pF1KB7 SDIL-GRPVGAAGGGLLGGLPRLNGLASSAGVYFGPAA---AVARGYPKPLAE-LPGRPP . : : : ..::: :: : :.::: :: : : ..:.::: :: : NP_005 NMALAGGPGPGGGGGSSGG----AGALSAAGVIRVPAHRPLAGAVAHPQPLATGLPTVPS 110 120 130 140 150 120 130 140 150 160 pF1KB7 I-FWPGV--VQGA--PWRDP--RLAGPAPAGGVLDK--DGKKKHSRPTFSGQQIFALEKT . ::: . : :: . : . .: .. :::. : .:. :: ::: NP_005 VPAMPGVNNLTGLTFPWMESNRRYTKDRFTGHPYQNRTPPKKKKPRTSFTRLQICELEKR 160 170 180 190 200 210 170 180 190 200 210 220 pF1KB7 FEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKRHAAEMASAKKKQDSDAEKLK :.. ::::. ::: :: .: ::..:::.:::::::::: :..:: :...: NP_005 FHRQKYLASAERAALAKALKMTDAQVKTWFQNRRTKWR-RQTAEEREAERQQANRILLQL 220 230 240 250 260 270 230 240 250 260 270 pF1KB7 VGGSDAEDDDEYNRPLDPNSDDEKITRLLKKHKPSNLALVSPCGGGAGDAL NP_005 QQEAFQKSLAQPLPADPLCVHNSSLFALQNLQPWSDDSTKITSVTSVASACE 280 290 300 310 320 330 >>NP_005506 (OMIM: 142994,176450) motor neuron and pancr (401 aa) initn: 291 init1: 236 opt: 270 Z-score: 212.8 bits: 47.7 E(85289): 4.1e-05 Smith-Waterman score: 304; 32.1% identity (55.6% similar) in 243 aa overlap (33-262:122-355) 10 20 30 40 50 60 pF1KB7 TNRPGAFVLSSAPLAALHNMAEMKTSLFPYALQGPAGFKAPALGGLGAQLPLGTPHGISD : . :. : : :::. : : : . NP_005 PKPGFLGAGGGGGGTGGGHGGPHHHAHPGAAAAAAAAAAAAAAGGLALGLH---PGGAQG 100 110 120 130 140 70 80 90 100 110 pF1KB7 ILGRPVGAAGGGLLGGLPRLN-GLASSAGVYFGPAAAVARGYPKPLAELPGRP--PI-FW : :. :: : : : . . :..:.. : :.. .::. . :..: :: . NP_005 GAGLPAQAA----LYGHPVYGYSAAAAAAALAGQHPALSYSYPQVQGAHPAHPADPIKLG 150 160 170 180 190 200 120 130 140 150 160 170 pF1KB7 PGVVQGAPWRDPRLAGPA-PAGGVLDKD------GKKKHSRPTFSGQQIFALEKTFEQTK :. : : :: : .... :: .. : .:..::.. ::. :. .: NP_005 AGTFQLDQWLRASTAGMILPKMPDFNSQAQSNLLGKCRRPRTAFTSQQLLELEHQFKLNK 210 220 230 240 250 260 180 190 200 210 220 pF1KB7 YLAGPERARLAYSLGMTESQVKVWFQNRRTKW-RKRHAAEMASAK-KKQDSDAEKLKVGG ::. :.: ..: :: .::.:::.:::::: :: :...: :.:. . .:: . . :: NP_005 YLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKKAKEQAAQEAEKQKGGGGGAGKGG 270 280 290 300 310 320 230 240 250 260 270 pF1KB7 SDAEDDDEYNRPLDPNSDDEKITRLLKKHKPSNLALVSPCGGGAGDAL .. .: : : :. : :. . :. NP_005 AEEPGAEELLGP--PAPGDKGSGRRLRDLRDSDPEEDEDEDDEDHFPYSNGASVHAASSD 330 340 350 360 370 380 NP_005 CSSEDDSPPPRPSHQPAPQ 390 400 >>NP_004089 (OMIM: 269160,600035) homeobox protein EMX2 (252 aa) initn: 239 init1: 216 opt: 263 Z-score: 210.1 bits: 46.5 E(85289): 5.8e-05 Smith-Waterman score: 263; 34.6% identity (64.1% similar) in 153 aa overlap (104-248:105-252) 80 90 100 110 120 130 pF1KB7 GLLGGLPRLNGLASSAGVYFGPAAAVARGYPKPLAELPGRPP-IFWPGVVQGAPWRDPRL :.:: : : :.: ... . :. NP_004 VSHPPNPAVPVHPVPPPHALAAHPLPSSHSPHPLFASQQRDPSTFYPWLIHRYRYLGHRF 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 AG--PAPAGGVLDKD--GKKKHSRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMT : .: . .: . : :. : .:: .:.. ::..::...:..: :: .::.::..: NP_004 QGNDTSPESFLLHNALARKPKRIRTAFSPSQLLRLEHAFEKNHYVVGAERKQLAHSLSLT 140 150 160 170 180 190 190 200 210 220 230 240 pF1KB7 ESQVKVWFQNRRTKWRKRHAAEMAS---AKKKQDSDAEKLKVGGSDAEDDDEYNRPLDPN :.::::::::::::..... : .: ::: .. ... ..: .. .: . NP_004 ETQVKVWFQNRRTKFKRQKLEEEGSDSQQKKKGTHHINRWRIATKQASPEE-----IDVT 200 210 220 230 240 250 260 270 pF1KB7 SDDEKITRLLKKHKPSNLALVSPCGGGAGDAL ::: NP_004 SDD 250 277 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 05:33:49 2016 done: Sun Nov 6 05:33:50 2016 Total Scan time: 8.110 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]