FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7566, 277 aa 1>>>pF1KB7566 277 - 277 aa - 277 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.5786+/-0.000769; mu= 6.2224+/- 0.046 mean_var=173.7093+/-36.224, 0's: 0 Z-trim(114.6): 174 B-trim: 0 in 0/50 Lambda= 0.097311 statistics sampled from 14948 (15134) to 14948 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.793), E-opt: 0.2 (0.465), width: 16 Scan time: 2.850 The best scores are: opt bits E(32554) CCDS7670.1 2 gene_id:84504|Hs108|chr10 ( 277) 1884 275.8 2.4e-74 CCDS3607.1 1 gene_id:4825|Hs108|chr4 ( 367) 969 147.5 1.4e-35 >>CCDS7670.1 2 gene_id:84504|Hs108|chr10 (277 aa) initn: 1884 init1: 1884 opt: 1884 Z-score: 1448.4 bits: 275.8 E(32554): 2.4e-74 Smith-Waterman score: 1884; 99.6% identity (100.0% similar) in 277 aa overlap (1-277:1-277) 10 20 30 40 50 60 pF1KB7 MDTNRPGAFVLSSAPLAALHNMAEMKTSLFPYALQGPAGFKAPALGGLGAQLPLGTPHGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 MDTNRPGAFVLSSAPLAALHNMAEMKTSLFPYALQGPAGFKAPALGGLGAQLPLGTPHGI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 SDILGRPVGAAGGGLLGGLPRLNGLASSAGVYFGPAAAVARGYPKPLAELPGRPPIFWPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 SDILGRPVGAAGGGLLGGLPRLNGLASSAGVYFGPAAAVARGYPKPLAELPGRPPIFWPG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 VVQGAPWRDPRLAGPAPAGGVLDKDGKKKHSRPTFSGQQIFALEKTFEQTKYLAGPERAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 VVQGAPWRDPRLAGPAPAGGVLDKDGKKKHSRPTFSGQQIFALEKTFEQTKYLAGPERAR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB7 LAYSLGMTESQVKVWFQNRRTKWRKRHAAEMASAKKKQDSDAEKLKVGGSDAEDDDEYNR ::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::: CCDS76 LAYSLGMTESQVKVWFQNRRTKWRKRHAVEMASAKKKQDSDAEKLKVGGSDAEDDDEYNR 190 200 210 220 230 240 250 260 270 pF1KB7 PLDPNSDDEKITRLLKKHKPSNLALVSPCGGGAGDAL ::::::::::::::::::::::::::::::::::::: CCDS76 PLDPNSDDEKITRLLKKHKPSNLALVSPCGGGAGDAL 250 260 270 >>CCDS3607.1 1 gene_id:4825|Hs108|chr4 (367 aa) initn: 1064 init1: 699 opt: 969 Z-score: 752.5 bits: 147.5 E(32554): 1.4e-35 Smith-Waterman score: 1007; 58.0% identity (71.3% similar) in 300 aa overlap (31-274:63-355) 10 20 30 40 50 pF1KB7 MDTNRPGAFVLSSAPLAALHNMAEMKTSLFPYALQGPAGFKAPALGGLGA------QLPL : . ..:.:.: :: :::.. :: CCDS36 TPLYPAAYPPLPAGPPSSSSSSSSSSSPSPPLGTHNPGGLKPPATGGLSSLGSPPQQLSA 40 50 60 70 80 90 60 70 pF1KB7 GTPHGISDILGRPV-----GAA------GG------------------------------ .:::::.:::.:: ::: .: CCDS36 ATPHGINDILSRPSMPVASGAALPSASPSGSSSSSSSSASASSASAAAAAAAAAAAAASS 100 110 120 130 140 150 80 90 100 110 120 pF1KB7 --GLLGGLPRLNGLASSA---GVYFGPAAAV--ARG-YPKPLAELPGRPPIFWPGVVQGA :::.::::...:. :.::.:.::. : : ::::::::::: :::::::.:. CCDS36 PAGLLAGLPRFSSLSPPPPPPGLYFSPSAAAVAAVGRYPKPLAELPGRTPIFWPGVMQSP 160 170 180 190 200 210 130 140 150 160 170 180 pF1KB7 PWRDPRLAGPAPAGGVL-DKDGKKKHSRPTFSGQQIFALEKTFEQTKYLAGPERARLAYS :::: ::: :..: :::::.::.::::::::::::::::::::::::::::::::: CCDS36 PWRDARLACTPHQGSILLDKDGKRKHTRPTFSGQQIFALEKTFEQTKYLAGPERARLAYS 220 230 240 250 260 270 190 200 210 220 230 240 pF1KB7 LGMTESQVKVWFQNRRTKWRKRHAAEMASAKKKQDSDAEKLKVGGSDAEDDDEYNRPLDP :::::::::::::::::::::.::::::.:::::::..:.:: .. . :.::.::.:::: CCDS36 LGMTESQVKVWFQNRRTKWRKKHAAEMATAKKKQDSETERLKGASENEEEDDDYNKPLDP 280 290 300 310 320 330 250 260 270 pF1KB7 NSDDEKITRLLKKHKPSNLALVSPCGGGAGDAL ::::::::.:::::: :. :::.: CCDS36 NSDDEKITQLLKKHKSSS-------GGGGGLLLHASEPESSS 340 350 360 277 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 05:33:48 2016 done: Sun Nov 6 05:33:48 2016 Total Scan time: 2.850 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]