FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE9434, 337 aa 1>>>pF1KE9434 337 - 337 aa - 337 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3566+/-0.00092; mu= 15.5958+/- 0.055 mean_var=161.4380+/-66.487, 0's: 0 Z-trim(105.7): 186 B-trim: 1138 in 2/45 Lambda= 0.100942 statistics sampled from 8150 (8565) to 8150 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.625), E-opt: 0.2 (0.263), width: 16 Scan time: 2.710 The best scores are: opt bits E(32554) CCDS7636.1 GPR26 gene_id:2849|Hs108|chr10 ( 337) 2221 336.2 2.3e-92 CCDS3403.1 GPR78 gene_id:27201|Hs108|chr4 ( 363) 1105 173.7 2e-43 >>CCDS7636.1 GPR26 gene_id:2849|Hs108|chr10 (337 aa) initn: 2221 init1: 2221 opt: 2221 Z-score: 1771.6 bits: 336.2 E(32554): 2.3e-92 Smith-Waterman score: 2221; 100.0% identity (100.0% similar) in 337 aa overlap (1-337:1-337) 10 20 30 40 50 60 pF1KE9 MNSWDAGLAGLLVGTMGVSLLSNALVLLCLLHSADIRRQAPALFTLNLTCGNLLCTVVNM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 MNSWDAGLAGLLVGTMGVSLLSNALVLLCLLHSADIRRQAPALFTLNLTCGNLLCTVVNM 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 PLTLAGVVAQRQPAGDRLCRLAAFLDTFLAANSMLSMAALSIDRWVAVVFPLSYRAKMRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 PLTLAGVVAQRQPAGDRLCRLAAFLDTFLAANSMLSMAALSIDRWVAVVFPLSYRAKMRL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 RDAALMVAYTWLHALTFPAAALALSWLGFHQLYASCTLCSRRPDERLRFAVFTGAFHALS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 RDAALMVAYTWLHALTFPAAALALSWLGFHQLYASCTLCSRRPDERLRFAVFTGAFHALS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 FLLSFVVLCCTYLKVLKVARFHCKRIDVITMQTLVLLVDLHPSVRERCLEEQKRRRQRAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 FLLSFVVLCCTYLKVLKVARFHCKRIDVITMQTLVLLVDLHPSVRERCLEEQKRRRQRAT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE9 KKISTFIGTFLVCFAPYVITRLVELFSTVPIGSHWGVLSKCLAYSKAASDPFVYSLLRHQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 KKISTFIGTFLVCFAPYVITRLVELFSTVPIGSHWGVLSKCLAYSKAASDPFVYSLLRHQ 250 260 270 280 290 300 310 320 330 pF1KE9 YRKSCKEILNRLLHRRSIHSSGLTGDSHSQNILPVSE ::::::::::::::::::::::::::::::::::::: CCDS76 YRKSCKEILNRLLHRRSIHSSGLTGDSHSQNILPVSE 310 320 330 >>CCDS3403.1 GPR78 gene_id:27201|Hs108|chr4 (363 aa) initn: 1140 init1: 1094 opt: 1105 Z-score: 893.0 bits: 173.7 E(32554): 2e-43 Smith-Waterman score: 1105; 52.3% identity (81.2% similar) in 329 aa overlap (1-323:1-327) 10 20 30 40 50 60 pF1KE9 MNSWDAGLAGLLVGTMGVSLLSNALVLLCLLHSADIRRQAPALFTLNLTCGNLLCTVVNM :. .: :::::: ...:.:::::::::: .::..: .: ... .::. :.:: ....: CCDS34 MGPGEALLAGLLVMVLAVALLSNALVLLCCAYSAELRTRASGVLLVNLSLGHLLLAALDM 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 PLTLAGVVAQRQPAGDRLCRLAAFLDTFLAANSMLSMAALSIDRWVAVVFPLSYRAKMRL :.:: ::. : :.. :.. .:::::::.:. ::.:::: :.:.:: ::: : ...: CCDS34 PFTLLGVMRGRTPSAPGACQVIGFLDTFLASNAALSVAALSADQWLAVGFPLRYAGRLRP 70 80 90 100 110 120 130 140 150 160 170 pF1KE9 RDAALMVAYTWLHALTFPAAALALSWLGFHQLYASCTLCSRRPDE--RLRFAVFTGAFHA : :.:... .: ..:.: .:::. ::::. . .:::.: : : : : :::.::...:: CCDS34 RYAGLLLGCAWGQSLAFSGAALGCSWLGYSSAFASCSL--RLPPEPERPRFAAFTATLHA 130 140 150 160 170 180 190 200 210 220 230 pF1KE9 LSFLLSFVVLCCTYLKVLKVARFHCKRIDVITMQTLVLLVDLHPSVRERCLEEQKRRRQR ..:.: ..::: : :.: .::: ::.:.:..::..:.::.:::::::.::: .:::::.: CCDS34 VGFVLPLAVLCLTSLQVHRVARRHCQRMDTVTMKALALLADLHPSVRQRCLIQQKRRRHR 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE9 ATKKISTFIGTFLVCFAPYVITRLVELFSTVPIGSHWGVLSKCLAYSKAASDPFVYSLLR ::.::. :.:::.::::::.:::.:: : ....::.:::::.::::..:::.::::: CCDS34 ATRKIGIAIATFLICFAPYVMTRLAELVPFVTVNAQWGILSKCLTYSKAVADPFTYSLLR 240 250 260 270 280 290 300 310 320 330 pF1KE9 HQYRKSCKEILNRLLHRR----SIHSSGLTGDSHSQNILPVSE . .:. ...:::.: : :.:.: CCDS34 RPFRQVLAGMVHRLLKRTPRPASTHDSSLDVAGMVHQLLKRTPRPASTHNGSVDTENDSC 300 310 320 330 340 350 337 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 15:19:15 2016 done: Sun Nov 6 15:19:15 2016 Total Scan time: 2.710 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]