FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3137, 348 aa 1>>>pF1KE3137 348 - 348 aa - 348 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0285+/-0.000333; mu= 18.5165+/- 0.021 mean_var=72.4893+/-14.680, 0's: 0 Z-trim(115.3): 31 B-trim: 0 in 0/53 Lambda= 0.150639 statistics sampled from 25634 (25652) to 25634 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.689), E-opt: 0.2 (0.301), width: 16 Scan time: 6.720 The best scores are: opt bits E(85289) NP_699167 (OMIM: 611310) L-seryl-tRNA(Sec) kinase ( 348) 2364 522.8 4.3e-148 XP_016871129 (OMIM: 611310) PREDICTED: L-seryl-tRN ( 358) 1969 437.0 3.1e-122 XP_016871130 (OMIM: 611310) PREDICTED: L-seryl-tRN ( 236) 1610 358.8 6.9e-99 >>NP_699167 (OMIM: 611310) L-seryl-tRNA(Sec) kinase [Hom (348 aa) initn: 2364 init1: 2364 opt: 2364 Z-score: 2779.6 bits: 522.8 E(85289): 4.3e-148 Smith-Waterman score: 2364; 99.7% identity (99.7% similar) in 348 aa overlap (1-348:1-348) 10 20 30 40 50 60 pF1KE3 MKTAENIRGTGSDGPRKRGLCVLCGLPAAGKSTFARALAHRLQQEQGWAIGVVAYDDVMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_699 MKTAENIRGTGSDGPRKRGLCVLCGLPAAGKSTFARALAHRLQQEQGWAIGVVAYDDVMP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 DAFLAGARARPAPSQWKLLRQELLKYLEYFLMAVINGCQMSVPPNRTEAMWEDFITCLKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_699 DAFLAGARARPAPSQWKLLRQELLKYLEYFLMAVINGCQMSVPPNRTEAMWEDFITCLKD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 QDLIFSAAFEAQSCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_699 QDLIFSAAFEAQSCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 CPLETCLQRNGQRPQALPPETIHLMRRKLEKPNPEKNAWEHNSLTIPSPACASEASLEVT ::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::: NP_699 CPLETCLQRNGQRPQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACASEASLEVT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 DLLLTALENPVKYAEDNMEQKDTDRIICSTNILHKTDQTLRRIVSQTMKEAKGNQEAFSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_699 DLLLTALENPVKYAEDNMEQKDTDRIICSTNILHKTDQTLRRIVSQTMKEAKGNQEAFSE 250 260 270 280 290 300 310 320 330 340 pF1KE3 MTFKQRWVRANHAAIWRIILGNEHIKCRSAKVGWLQCCRIEKRPLSTG :::::::::::::::::::::::::::::::::::::::::::::::: NP_699 MTFKQRWVRANHAAIWRIILGNEHIKCRSAKVGWLQCCRIEKRPLSTG 310 320 330 340 >>XP_016871129 (OMIM: 611310) PREDICTED: L-seryl-tRNA(Se (358 aa) initn: 1969 init1: 1969 opt: 1969 Z-score: 2315.5 bits: 437.0 E(85289): 3.1e-122 Smith-Waterman score: 1969; 99.0% identity (99.3% similar) in 295 aa overlap (1-295:1-295) 10 20 30 40 50 60 pF1KE3 MKTAENIRGTGSDGPRKRGLCVLCGLPAAGKSTFARALAHRLQQEQGWAIGVVAYDDVMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MKTAENIRGTGSDGPRKRGLCVLCGLPAAGKSTFARALAHRLQQEQGWAIGVVAYDDVMP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 DAFLAGARARPAPSQWKLLRQELLKYLEYFLMAVINGCQMSVPPNRTEAMWEDFITCLKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 DAFLAGARARPAPSQWKLLRQELLKYLEYFLMAVINGCQMSVPPNRTEAMWEDFITCLKD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 QDLIFSAAFEAQSCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QDLIFSAAFEAQSCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 CPLETCLQRNGQRPQALPPETIHLMRRKLEKPNPEKNAWEHNSLTIPSPACASEASLEVT ::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::: XP_016 CPLETCLQRNGQRPQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACASEASLEVT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 DLLLTALENPVKYAEDNMEQKDTDRIICSTNILHKTDQTLRRIVSQTMKEAKGNQEAFSE :::::::::::::::::::::::::::::::::::::::::::::::::::: .: XP_016 DLLLTALENPVKYAEDNMEQKDTDRIICSTNILHKTDQTLRRIVSQTMKEAKDEQVLPHN 250 260 270 280 290 300 310 320 330 340 pF1KE3 MTFKQRWVRANHAAIWRIILGNEHIKCRSAKVGWLQCCRIEKRPLSTG XP_016 LKLLAEELNKLKAEFLEDLKQGNKKYLCFQQTIDIPDVISFFHYEKDNIVQKYFSKQH 310 320 330 340 350 >>XP_016871130 (OMIM: 611310) PREDICTED: L-seryl-tRNA(Se (236 aa) initn: 1610 init1: 1610 opt: 1610 Z-score: 1896.3 bits: 358.8 E(85289): 6.9e-99 Smith-Waterman score: 1610; 99.6% identity (99.6% similar) in 235 aa overlap (1-235:1-235) 10 20 30 40 50 60 pF1KE3 MKTAENIRGTGSDGPRKRGLCVLCGLPAAGKSTFARALAHRLQQEQGWAIGVVAYDDVMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MKTAENIRGTGSDGPRKRGLCVLCGLPAAGKSTFARALAHRLQQEQGWAIGVVAYDDVMP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 DAFLAGARARPAPSQWKLLRQELLKYLEYFLMAVINGCQMSVPPNRTEAMWEDFITCLKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 DAFLAGARARPAPSQWKLLRQELLKYLEYFLMAVINGCQMSVPPNRTEAMWEDFITCLKD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 QDLIFSAAFEAQSCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QDLIFSAAFEAQSCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 CPLETCLQRNGQRPQALPPETIHLMRRKLEKPNPEKNAWEHNSLTIPSPACASEASLEVT ::::::::::::::::::::::::: ::::::::::::::::::::::::::::: XP_016 CPLETCLQRNGQRPQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACASEAR 190 200 210 220 230 250 260 270 280 290 300 pF1KE3 DLLLTALENPVKYAEDNMEQKDTDRIICSTNILHKTDQTLRRIVSQTMKEAKGNQEAFSE 348 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 15:20:02 2016 done: Sun Nov 6 15:20:03 2016 Total Scan time: 6.720 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]