FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5229, 186 aa 1>>>pF1KE5229 186 - 186 aa - 186 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7432+/-0.000738; mu= 12.7551+/- 0.045 mean_var=111.9576+/-22.346, 0's: 0 Z-trim(111.5): 121 B-trim: 0 in 0/50 Lambda= 0.121213 statistics sampled from 12328 (12466) to 12328 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.383), width: 16 Scan time: 1.640 The best scores are: opt bits E(32554) CCDS7597.1 VAX1 gene_id:11023|Hs108|chr10 ( 186) 1240 226.7 6.6e-60 CCDS44483.1 VAX1 gene_id:11023|Hs108|chr10 ( 334) 960 178.0 5.5e-45 CCDS1911.1 VAX2 gene_id:25806|Hs108|chr2 ( 290) 488 95.3 3.5e-20 >>CCDS7597.1 VAX1 gene_id:11023|Hs108|chr10 (186 aa) initn: 1240 init1: 1240 opt: 1240 Z-score: 1189.0 bits: 226.7 E(32554): 6.6e-60 Smith-Waterman score: 1240; 100.0% identity (100.0% similar) in 186 aa overlap (1-186:1-186) 10 20 30 40 50 60 pF1KE5 MFGKPDKMDVRCHSDAEAARVSKNAHKESRESKGAEGNLPAAFLKEPQGAFSASGAAEDC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 MFGKPDKMDVRCHSDAEAARVSKNAHKESRESKGAEGNLPAAFLKEPQGAFSASGAAEDC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 NKSKSNSAADPDYCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 NKSKSNSAADPDYCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 RCQYVVGRERTELARQLNLSETQANSEENNERFKRGIKKQKKKRKKEPANDESRRGDSGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 RCQYVVGRERTELARQLNLSETQANSEENNERFKRGIKKQKKKRKKEPANDESRRGDSGG 130 140 150 160 170 180 pF1KE5 RGWQPL :::::: CCDS75 RGWQPL >>CCDS44483.1 VAX1 gene_id:11023|Hs108|chr10 (334 aa) initn: 961 init1: 944 opt: 960 Z-score: 921.2 bits: 178.0 E(32554): 5.5e-45 Smith-Waterman score: 960; 89.8% identity (93.4% similar) in 167 aa overlap (1-167:1-162) 10 20 30 40 50 60 pF1KE5 MFGKPDKMDVRCHSDAEAARVSKNAHKESRESKGAEGNLPAAFLKEPQGAFSASGAAEDC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 MFGKPDKMDVRCHSDAEAARVSKNAHKESRESKGAEGNLPAAFLKEPQGAFSASGAAEDC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 NKSKSNSAADPDYCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 NKSKSNSAADPDYCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 RCQYVVGRERTELARQLNLSETQANSEENNERFKRGIKKQKKKRKKEPANDESRRGDSGG :::::::::::::::::::::::.. .:.: :::: . :. CCDS44 RCQYVVGRERTELARQLNLSETQVKVWFQNRR-----TKQKKDQGKDSELRSVVSETAAT 130 140 150 160 170 pF1KE5 RGWQPL CCDS44 CSVLRLLEQGRLLSPPGLPALLPPCATGALGSALRGPSLPALGAGAAAGSAAAAAAAAPG 180 190 200 210 220 230 >>CCDS1911.1 VAX2 gene_id:25806|Hs108|chr2 (290 aa) initn: 508 init1: 461 opt: 488 Z-score: 475.9 bits: 95.3 E(32554): 3.5e-20 Smith-Waterman score: 488; 62.6% identity (80.2% similar) in 131 aa overlap (46-173:45-174) 20 30 40 50 60 70 pF1KE5 AEAARVSKNAHKESRESKGAEGNLPAAFLKEPQGAFSASGAAEDCNKSKSNSAADP---D : :. ..: :. . . :.. : : CCDS19 RAESGGGGGRCGDRSGAGDLRADGGGHSPTEVAGTSASSPAGSRESGADSDGQPGPGEAD 20 30 40 50 60 70 80 90 100 110 120 130 pF1KE5 YCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTE .:::::::::::.::::.:::::::::::::::::::::::::::::::::::::::::: CCDS19 HCRRILVRDAKGTIREIVLPKGLDLDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTE 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 LARQLNLSETQANSEENNERFKRGIKKQKKKRKKEPANDESRRGDSGGRGWQPL :::::::::::.. .:.: :. : :.. .:. ... : CCDS19 LARQLNLSETQVKVWFQNRRTKQK-KDQSRDLEKRASSSASEAFATSNILRLLEQGRLLS 140 150 160 170 180 190 CCDS19 VPRAPSLLALTPSLPGLPASHRGTSLGDPRNSSPRLNPLSSASASPPLPPPLPAVCFSSA 200 210 220 230 240 250 186 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:42:17 2016 done: Mon Nov 7 22:42:17 2016 Total Scan time: 1.640 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]