Result of FASTA (ccds) for
pFN21AE5246
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5246, 243 aa
1>>>pF1KE5246 243 - 243 aa - 243 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7433+/-0.000643; mu= 17.2063+/- 0.039
mean_var=55.4585+/-11.073, 0's: 0 Z-trim(110.3): 19 B-trim: 618 in 1/52
Lambda= 0.172223
statistics sampled from 11464 (11480) to 11464 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.353), width: 16
Scan time: 1.960
The best scores are: opt bits E(32554)
CCDS7556.1 GSTO2 gene_id:119391|Hs108|chr10 ( 243) 1718 434.3 3.5e-122
CCDS53575.1 GSTO2 gene_id:119391|Hs108|chr10 ( 215) 1527 386.8 6.2e-108
CCDS7555.1 GSTO1 gene_id:9446|Hs108|chr10 ( 241) 1098 280.2 8.3e-76
CCDS53573.1 GSTO1 gene_id:9446|Hs108|chr10 ( 213) 941 241.2 4.1e-64
CCDS53574.1 GSTO2 gene_id:119391|Hs108|chr10 ( 209) 862 221.6 3.3e-58
CCDS53572.1 GSTO1 gene_id:9446|Hs108|chr10 ( 208) 669 173.6 8.9e-44
>>CCDS7556.1 GSTO2 gene_id:119391|Hs108|chr10 (243 aa)
initn: 1718 init1: 1718 opt: 1718 Z-score: 2307.0 bits: 434.3 E(32554): 3.5e-122
Smith-Waterman score: 1718; 100.0% identity (100.0% similar) in 243 aa overlap (1-243:1-243)
10 20 30 40 50 60
pF1KE5 MSGDATRTLGKGSQPPGPVPEGLIRIYSMRFCPYSHRTRLVLKAKDIRHEVVNINLRNKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MSGDATRTLGKGSQPPGPVPEGLIRIYSMRFCPYSHRTRLVLKAKDIRHEVVNINLRNKP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 EWYYTKHPFGHIPVLETSQCQLIYESVIACEYLDDAYPGRKLFPYDPYERARQKMLLELF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 EWYYTKHPFGHIPVLETSQCQLIYESVIACEYLDDAYPGRKLFPYDPYERARQKMLLELF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 CKVPHLTKECLVALRCGRECTNLKAALRQEFSNLEEILEYQNTTFFGGTCISMIDYLLWP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 CKVPHLTKECLVALRCGRECTNLKAALRQEFSNLEEILEYQNTTFFGGTCISMIDYLLWP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 WFERLDVYGILDCVSHTPALRLWISAMKWDPTVCALLMDKSIFQGFLNLYFQNNPNAFDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 WFERLDVYGILDCVSHTPALRLWISAMKWDPTVCALLMDKSIFQGFLNLYFQNNPNAFDF
190 200 210 220 230 240
pF1KE5 GLC
:::
CCDS75 GLC
>>CCDS53575.1 GSTO2 gene_id:119391|Hs108|chr10 (215 aa)
initn: 1527 init1: 1527 opt: 1527 Z-score: 2051.3 bits: 386.8 E(32554): 6.2e-108
Smith-Waterman score: 1527; 100.0% identity (100.0% similar) in 215 aa overlap (29-243:1-215)
10 20 30 40 50 60
pF1KE5 MSGDATRTLGKGSQPPGPVPEGLIRIYSMRFCPYSHRTRLVLKAKDIRHEVVNINLRNKP
::::::::::::::::::::::::::::::::
CCDS53 MRFCPYSHRTRLVLKAKDIRHEVVNINLRNKP
10 20 30
70 80 90 100 110 120
pF1KE5 EWYYTKHPFGHIPVLETSQCQLIYESVIACEYLDDAYPGRKLFPYDPYERARQKMLLELF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EWYYTKHPFGHIPVLETSQCQLIYESVIACEYLDDAYPGRKLFPYDPYERARQKMLLELF
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE5 CKVPHLTKECLVALRCGRECTNLKAALRQEFSNLEEILEYQNTTFFGGTCISMIDYLLWP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 CKVPHLTKECLVALRCGRECTNLKAALRQEFSNLEEILEYQNTTFFGGTCISMIDYLLWP
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE5 WFERLDVYGILDCVSHTPALRLWISAMKWDPTVCALLMDKSIFQGFLNLYFQNNPNAFDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 WFERLDVYGILDCVSHTPALRLWISAMKWDPTVCALLMDKSIFQGFLNLYFQNNPNAFDF
160 170 180 190 200 210
pF1KE5 GLC
:::
CCDS53 GLC
>>CCDS7555.1 GSTO1 gene_id:9446|Hs108|chr10 (241 aa)
initn: 1103 init1: 683 opt: 1098 Z-score: 1474.5 bits: 280.2 E(32554): 8.3e-76
Smith-Waterman score: 1098; 64.0% identity (87.2% similar) in 242 aa overlap (1-242:1-241)
10 20 30 40 50 60
pF1KE5 MSGDATRTLGKGSQPPGPVPEGLIRIYSMRFCPYSHRTRLVLKAKDIRHEVVNINLRNKP
:::...:.::::: :::::::: ::::::::::...::::::::: :::::.::::.:::
CCDS75 MSGESARSLGKGSAPPGPVPEGSIRIYSMRFCPFAERTRLVLKAKGIRHEVININLKNKP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 EWYYTKHPFGHIPVLETSQCQLIYESVIACEYLDDAYPGRKLFPYDPYERARQKMLLELF
::.. :.::: .::::.:: ::::::.:.:::::.::::.::.: ::::.: :::.::::
CCDS75 EWFFKKNPFGLVPVLENSQGQLIYESAITCEYLDEAYPGKKLLPDDPYEKACQKMILELF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 CKVPHLTKECLVALRCGRECTNLKAALRQEFSNLEEILEYQNTTFFGGTCISMIDYLLWP
::: :. .. . .. ..:: .:.::..:::.: ..::::::. :::::::.::
CCDS75 SKVPSLVGS-FIRSQNKEDYAGLKEEFRKEFTKLEEVLTNKKTTFFGGNSISMIDYLIWP
130 140 150 160 170
190 200 210 220 230 240
pF1KE5 WFERLDVYGILDCVSHTPALRLWISAMKWDPTVCALLMDKSIFQGFLNLYFQNNPNAFDF
:::::... . .::.::: :.::..::: :::: ::: ... .::::.::.::.:.: :.
CCDS75 WFERLEAMKLNECVDHTPKLKLWMAAMKEDPTVSALLTSEKDWQGFLELYLQNSPEACDY
180 190 200 210 220 230
pF1KE5 GLC
::
CCDS75 GL
240
>>CCDS53573.1 GSTO1 gene_id:9446|Hs108|chr10 (213 aa)
initn: 946 init1: 526 opt: 941 Z-score: 1264.5 bits: 241.2 E(32554): 4.1e-64
Smith-Waterman score: 941; 62.1% identity (86.4% similar) in 214 aa overlap (29-242:1-213)
10 20 30 40 50 60
pF1KE5 MSGDATRTLGKGSQPPGPVPEGLIRIYSMRFCPYSHRTRLVLKAKDIRHEVVNINLRNKP
:::::...::::::::: :::::.::::.:::
CCDS53 MRFCPFAERTRLVLKAKGIRHEVININLKNKP
10 20 30
70 80 90 100 110 120
pF1KE5 EWYYTKHPFGHIPVLETSQCQLIYESVIACEYLDDAYPGRKLFPYDPYERARQKMLLELF
::.. :.::: .::::.:: ::::::.:.:::::.::::.::.: ::::.: :::.::::
CCDS53 EWFFKKNPFGLVPVLENSQGQLIYESAITCEYLDEAYPGKKLLPDDPYEKACQKMILELF
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE5 CKVPHLTKECLVALRCGRECTNLKAALRQEFSNLEEILEYQNTTFFGGTCISMIDYLLWP
::: :. .. . .. ..:: .:.::..:::.: ..::::::. :::::::.::
CCDS53 SKVPSLVGS-FIRSQNKEDYAGLKEEFRKEFTKLEEVLTNKKTTFFGGNSISMIDYLIWP
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE5 WFERLDVYGILDCVSHTPALRLWISAMKWDPTVCALLMDKSIFQGFLNLYFQNNPNAFDF
:::::... . .::.::: :.::..::: :::: ::: ... .::::.::.::.:.: :.
CCDS53 WFERLEAMKLNECVDHTPKLKLWMAAMKEDPTVSALLTSEKDWQGFLELYLQNSPEACDY
160 170 180 190 200 210
pF1KE5 GLC
::
CCDS53 GL
>>CCDS53574.1 GSTO2 gene_id:119391|Hs108|chr10 (209 aa)
initn: 884 init1: 862 opt: 862 Z-score: 1158.5 bits: 221.6 E(32554): 3.3e-58
Smith-Waterman score: 1411; 86.0% identity (86.0% similar) in 243 aa overlap (1-243:1-209)
10 20 30 40 50 60
pF1KE5 MSGDATRTLGKGSQPPGPVPEGLIRIYSMRFCPYSHRTRLVLKAKDIRHEVVNINLRNKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MSGDATRTLGKGSQPPGPVPEGLIRIYSMRFCPYSHRTRLVLKAKDIRHEVVNINLRNKP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 EWYYTKHPFGHIPVLETSQCQLIYESVIACEYLDDAYPGRKLFPYDPYERARQKMLLELF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EWYYTKHPFGHIPVLETSQCQLIYESVIACEYLDDAYPGRKLFPYDPYERARQKMLLELF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 CKVPHLTKECLVALRCGRECTNLKAALRQEFSNLEEILEYQNTTFFGGTCISMIDYLLWP
:: ::::::::::::::::::::::::
CCDS53 CK----------------------------------ILEYQNTTFFGGTCISMIDYLLWP
130 140
190 200 210 220 230 240
pF1KE5 WFERLDVYGILDCVSHTPALRLWISAMKWDPTVCALLMDKSIFQGFLNLYFQNNPNAFDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 WFERLDVYGILDCVSHTPALRLWISAMKWDPTVCALLMDKSIFQGFLNLYFQNNPNAFDF
150 160 170 180 190 200
pF1KE5 GLC
:::
CCDS53 GLC
>>CCDS53572.1 GSTO1 gene_id:9446|Hs108|chr10 (208 aa)
initn: 669 init1: 669 opt: 669 Z-score: 899.4 bits: 173.6 E(32554): 8.9e-44
Smith-Waterman score: 969; 59.9% identity (77.7% similar) in 242 aa overlap (1-242:1-208)
10 20 30 40 50 60
pF1KE5 MSGDATRTLGKGSQPPGPVPEGLIRIYSMRFCPYSHRTRLVLKAKDIRHEVVNINLRNKP
:::...:.::::: :::::::: ::::::::::...::::::::: :::::.::::.:::
CCDS53 MSGESARSLGKGSAPPGPVPEGSIRIYSMRFCPFAERTRLVLKAKGIRHEVININLKNKP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 EWYYTKHPFGHIPVLETSQCQLIYESVIACEYLDDAYPGRKLFPYDPYERARQKMLLELF
::.. :.::: .::::.:: ::::::.:.:::::.::::.::.: ::::.: :::.::::
CCDS53 EWFFKKNPFGLVPVLENSQGQLIYESAITCEYLDEAYPGKKLLPDDPYEKACQKMILELF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 CKVPHLTKECLVALRCGRECTNLKAALRQEFSNLEEILEYQNTTFFGGTCISMIDYLLWP
:: : ..::::::. :::::::.::
CCDS53 SKV----------------------------------LTNKKTTFFGGNSISMIDYLIWP
130 140
190 200 210 220 230 240
pF1KE5 WFERLDVYGILDCVSHTPALRLWISAMKWDPTVCALLMDKSIFQGFLNLYFQNNPNAFDF
:::::... . .::.::: :.::..::: :::: ::: ... .::::.::.::.:.: :.
CCDS53 WFERLEAMKLNECVDHTPKLKLWMAAMKEDPTVSALLTSEKDWQGFLELYLQNSPEACDY
150 160 170 180 190 200
pF1KE5 GLC
::
CCDS53 GL
243 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 22:50:36 2016 done: Mon Nov 7 22:50:37 2016
Total Scan time: 1.960 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]