FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6819, 342 aa
  1>>>pF1KE6819     342 - 342 aa - 342 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6024+/-0.000789; mu= 14.6082+/- 0.047
 mean_var=64.5772+/-12.984, 0's: 0 Z-trim(107.0): 15  B-trim: 0 in 0/50
 Lambda= 0.159601
 statistics sampled from 9435 (9439) to 9435 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.659), E-opt: 0.2 (0.282), width:  16
 Scan time:  1.140

The best scores are:                                      opt bits E(33420)
CCDS31239.1 RNLS gene_id:55328|Hs109|chr10         ( 342) 2318 542.3 2.2e-154
CCDS7388.1 RNLS gene_id:55328|Hs109|chr10          ( 315) 1976 463.6  1e-130


>>CCDS31239.1 RNLS gene_id:55328|Hs109|chr10              (342 aa)
 initn: 2318 init1: 2318 opt: 2318  Z-score: 2885.5  bits: 542.3 E(33420): 2.2e-154
Smith-Waterman score: 2318; 99.7% identity (100.0% similar) in 342 aa overlap (1-342:1-342)

               10        20        30        40        50        60
pF1KE6 MAQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGA
       ::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::
CCDS31 MAQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKAEDSGGRMTTACSPHNPQCTADLGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 QYITCTPHYAKKHQRFYDELLAYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QYITCTPHYAKKHQRFYDELLAYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 ESGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIVLTMPVPEILQLQGDITTLISEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ESGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIVLTMPVPEILQLQGDITTLISEC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 QRQQLEAVSYSSRYALGLFYEAGTKIDVPWAGQYITSNPCIRFVSIDNKKRNIESSEIGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QRQQLEAVSYSSRYALGLFYEAGTKIDVPWAGQYITSNPCIRFVSIDNKKRNIESSEIGP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 SLVIHTTVPFGVTYLEHSIEDVQELVFQQLENILPGLPQPIATKCQKWRHSQVTNAAANC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SLVIHTTVPFGVTYLEHSIEDVQELVFQQLENILPGLPQPIATKCQKWRHSQVTNAAANC
              250       260       270       280       290       300

              310       320       330       340  
pF1KE6 PGQMTLHHKPFLACGGDGFTQSNFDGCITSALCVLEALKNYI
       ::::::::::::::::::::::::::::::::::::::::::
CCDS31 PGQMTLHHKPFLACGGDGFTQSNFDGCITSALCVLEALKNYI
              310       320       330       340  

>>CCDS7388.1 RNLS gene_id:55328|Hs109|chr10               (315 aa)
 initn: 1996 init1: 1976 opt: 1976  Z-score: 2460.5  bits: 463.6 E(33420): 1e-130
Smith-Waterman score: 1976; 99.0% identity (99.7% similar) in 296 aa overlap (1-296:1-296)

               10        20        30        40        50        60
pF1KE6 MAQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGA
       ::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::
CCDS73 MAQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKAEDSGGRMTTACSPHNPQCTADLGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 QYITCTPHYAKKHQRFYDELLAYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QYITCTPHYAKKHQRFYDELLAYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 ESGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIVLTMPVPEILQLQGDITTLISEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ESGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIVLTMPVPEILQLQGDITTLISEC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 QRQQLEAVSYSSRYALGLFYEAGTKIDVPWAGQYITSNPCIRFVSIDNKKRNIESSEIGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QRQQLEAVSYSSRYALGLFYEAGTKIDVPWAGQYITSNPCIRFVSIDNKKRNIESSEIGP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 SLVIHTTVPFGVTYLEHSIEDVQELVFQQLENILPGLPQPIATKCQKWRHSQVTNAAANC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::: .:    
CCDS73 SLVIHTTVPFGVTYLEHSIEDVQELVFQQLENILPGLPQPIATKCQKWRHSQVPSAGVIL
              250       260       270       280       290       300

              310       320       330       340  
pF1KE6 PGQMTLHHKPFLACGGDGFTQSNFDGCITSALCVLEALKNYI
                                                 
CCDS73 GCAKSPWMMAIGFPI                           
              310                                




342 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Jun 19 14:25:37 2019 done: Wed Jun 19 14:25:37 2019
 Total Scan time:  1.140 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]