FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3015, 110 aa 1>>>pF1KE3015 110 - 110 aa - 110 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6436+/-0.000258; mu= 8.7572+/- 0.016 mean_var=68.1932+/-13.422, 0's: 0 Z-trim(120.8): 4 B-trim: 0 in 0/55 Lambda= 0.155311 statistics sampled from 36439 (36443) to 36439 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.797), E-opt: 0.2 (0.427), width: 16 Scan time: 4.270 The best scores are: opt bits E(85289) NP_775744 (OMIM: 613427) anaphase-promoting comple ( 110) 707 166.1 1e-41 NP_001229475 (OMIM: 613427) anaphase-promoting com ( 110) 707 166.1 1e-41 NP_001229476 (OMIM: 613427) anaphase-promoting com ( 110) 707 166.1 1e-41 NP_001229477 (OMIM: 613427) anaphase-promoting com ( 85) 301 75.1 2e-14 >>NP_775744 (OMIM: 613427) anaphase-promoting complex su (110 aa) initn: 707 init1: 707 opt: 707 Z-score: 870.0 bits: 166.1 E(85289): 1e-41 Smith-Waterman score: 707; 100.0% identity (100.0% similar) in 110 aa overlap (1-110:1-110) 10 20 30 40 50 60 pF1KE3 MAASSSSSSAGGVSGSSVTGSGFSVSDLAPPRKALFTYPKGAGEMLEDGSERFLCESVFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_775 MAASSSSSSAGGVSGSSVTGSGFSVSDLAPPRKALFTYPKGAGEMLEDGSERFLCESVFS 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 YQVASTLKQVKHDQQVARMEKLAGLVEELEADEWRFKPIEQLLGFTPSSG :::::::::::::::::::::::::::::::::::::::::::::::::: NP_775 YQVASTLKQVKHDQQVARMEKLAGLVEELEADEWRFKPIEQLLGFTPSSG 70 80 90 100 110 >>NP_001229475 (OMIM: 613427) anaphase-promoting complex (110 aa) initn: 707 init1: 707 opt: 707 Z-score: 870.0 bits: 166.1 E(85289): 1e-41 Smith-Waterman score: 707; 100.0% identity (100.0% similar) in 110 aa overlap (1-110:1-110) 10 20 30 40 50 60 pF1KE3 MAASSSSSSAGGVSGSSVTGSGFSVSDLAPPRKALFTYPKGAGEMLEDGSERFLCESVFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAASSSSSSAGGVSGSSVTGSGFSVSDLAPPRKALFTYPKGAGEMLEDGSERFLCESVFS 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 YQVASTLKQVKHDQQVARMEKLAGLVEELEADEWRFKPIEQLLGFTPSSG :::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YQVASTLKQVKHDQQVARMEKLAGLVEELEADEWRFKPIEQLLGFTPSSG 70 80 90 100 110 >>NP_001229476 (OMIM: 613427) anaphase-promoting complex (110 aa) initn: 707 init1: 707 opt: 707 Z-score: 870.0 bits: 166.1 E(85289): 1e-41 Smith-Waterman score: 707; 100.0% identity (100.0% similar) in 110 aa overlap (1-110:1-110) 10 20 30 40 50 60 pF1KE3 MAASSSSSSAGGVSGSSVTGSGFSVSDLAPPRKALFTYPKGAGEMLEDGSERFLCESVFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAASSSSSSAGGVSGSSVTGSGFSVSDLAPPRKALFTYPKGAGEMLEDGSERFLCESVFS 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 YQVASTLKQVKHDQQVARMEKLAGLVEELEADEWRFKPIEQLLGFTPSSG :::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YQVASTLKQVKHDQQVARMEKLAGLVEELEADEWRFKPIEQLLGFTPSSG 70 80 90 100 110 >>NP_001229477 (OMIM: 613427) anaphase-promoting complex (85 aa) initn: 301 init1: 301 opt: 301 Z-score: 380.2 bits: 75.1 E(85289): 2e-14 Smith-Waterman score: 484; 77.3% identity (77.3% similar) in 110 aa overlap (1-110:1-85) 10 20 30 40 50 60 pF1KE3 MAASSSSSSAGGVSGSSVTGSGFSVSDLAPPRKALFTYPKGAGEMLEDGSERFLCESVFS :::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAASSSSSSAGGVSGSSVTGSGFSVSDLAPPRKALFTYPKGAGEMLED------------ 10 20 30 40 70 80 90 100 110 pF1KE3 YQVASTLKQVKHDQQVARMEKLAGLVEELEADEWRFKPIEQLLGFTPSSG ::::::::::::::::::::::::::::::::::::: NP_001 -------------QQVARMEKLAGLVEELEADEWRFKPIEQLLGFTPSSG 50 60 70 80 110 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 15:25:37 2016 done: Sun Nov 6 15:25:38 2016 Total Scan time: 4.270 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]