FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3015, 110 aa
  1>>>pF1KE3015 110 - 110 aa - 110 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8181+/-0.000546; mu= 7.5176+/- 0.033
 mean_var=65.6109+/-12.990, 0's: 0 Z-trim(113.3): 3  B-trim: 0 in 0/52
 Lambda= 0.158338
 statistics sampled from 13938 (13941) to 13938 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.802), E-opt: 0.2 (0.428), width:  16
 Scan time:  1.480

The best scores are:                                      opt bits E(32554)
CCDS7314.1 ANAPC16 gene_id:119504|Hs108|chr10      ( 110)  707 169.2 4.7e-43
CCDS73147.1 ANAPC16 gene_id:119504|Hs108|chr10     (  85)  301 76.4 3.1e-15


>>CCDS7314.1 ANAPC16 gene_id:119504|Hs108|chr10           (110 aa)
 initn: 707 init1: 707 opt: 707  Z-score: 886.4  bits: 169.2 E(32554): 4.7e-43
Smith-Waterman score: 707; 100.0% identity (100.0% similar) in 110 aa overlap (1-110:1-110)

               10        20        30        40        50        60
pF1KE3 MAASSSSSSAGGVSGSSVTGSGFSVSDLAPPRKALFTYPKGAGEMLEDGSERFLCESVFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MAASSSSSSAGGVSGSSVTGSGFSVSDLAPPRKALFTYPKGAGEMLEDGSERFLCESVFS
               10        20        30        40        50        60

               70        80        90       100       110
pF1KE3 YQVASTLKQVKHDQQVARMEKLAGLVEELEADEWRFKPIEQLLGFTPSSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 YQVASTLKQVKHDQQVARMEKLAGLVEELEADEWRFKPIEQLLGFTPSSG
               70        80        90       100       110

>>CCDS73147.1 ANAPC16 gene_id:119504|Hs108|chr10          (85 aa)
 initn: 301 init1: 301 opt: 301  Z-score: 387.0  bits: 76.4 E(32554): 3.1e-15
Smith-Waterman score: 484; 77.3% identity (77.3% similar) in 110 aa overlap (1-110:1-85)

               10        20        30        40        50        60
pF1KE3 MAASSSSSSAGGVSGSSVTGSGFSVSDLAPPRKALFTYPKGAGEMLEDGSERFLCESVFS
       ::::::::::::::::::::::::::::::::::::::::::::::::            
CCDS73 MAASSSSSSAGGVSGSSVTGSGFSVSDLAPPRKALFTYPKGAGEMLED------------
               10        20        30        40                    

               70        80        90       100       110
pF1KE3 YQVASTLKQVKHDQQVARMEKLAGLVEELEADEWRFKPIEQLLGFTPSSG
                    :::::::::::::::::::::::::::::::::::::
CCDS73 -------------QQVARMEKLAGLVEELEADEWRFKPIEQLLGFTPSSG
                    50        60        70        80     




110 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 15:25:37 2016 done: Sun Nov  6 15:25:37 2016
 Total Scan time:  1.480 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]