FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2187, 474 aa 1>>>pF1KE2187 474 - 474 aa - 474 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 16.5706+/-0.000451; mu= -32.4472+/- 0.028 mean_var=677.6327+/-138.157, 0's: 0 Z-trim(126.0): 7 B-trim: 0 in 0/62 Lambda= 0.049269 statistics sampled from 51038 (51051) to 51038 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.823), E-opt: 0.2 (0.599), width: 16 Scan time: 10.300 The best scores are: opt bits E(85289) NP_005427 (OMIM: 188550,601985) coiled-coil domain ( 474) 3113 235.7 2.2e-61 >>NP_005427 (OMIM: 188550,601985) coiled-coil domain-con (474 aa) initn: 3113 init1: 3113 opt: 3113 Z-score: 1223.1 bits: 235.7 E(85289): 2.2e-61 Smith-Waterman score: 3113; 100.0% identity (100.0% similar) in 474 aa overlap (1-474:1-474) 10 20 30 40 50 60 pF1KE2 MADSASESDTDGAGGNSSSSAAMQSSCSSTSGGGGGGGGGGGGGKSGGIVISPFRLEELT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MADSASESDTDGAGGNSSSSAAMQSSCSSTSGGGGGGGGGGGGGKSGGIVISPFRLEELT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 NRLASLQQENKVLKIELETYKLKCKALQEENRDLRKASVTIQARAEQEEEFISNTLFKKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 NRLASLQQENKVLKIELETYKLKCKALQEENRDLRKASVTIQARAEQEEEFISNTLFKKI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 QALQKEKETLAVNYEKEEEFLTNELSRKLMQLQHEKAELEQHLEQEQEFQVNKLMKKIKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 QALQKEKETLAVNYEKEEEFLTNELSRKLMQLQHEKAELEQHLEQEQEFQVNKLMKKIKK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 LENDTISKQLTLEQLRREKIDLENTLEQEQEALVNRLWKRMDKLEAEKRILQEKLDQPVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 LENDTISKQLTLEQLRREKIDLENTLEQEQEALVNRLWKRMDKLEAEKRILQEKLDQPVS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 APPSPRDISMEIDSPENMMRHIRFLKNEVERLKKQLRAAQLQHSEKMAQYLEEERHMREE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 APPSPRDISMEIDSPENMMRHIRFLKNEVERLKKQLRAAQLQHSEKMAQYLEEERHMREE 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 NLRLQRKLQREMERREALCRQLSESESSLEMDDERYFNEMSAQGLRPRTVSSPIPYTPSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 NLRLQRKLQREMERREALCRQLSESESSLEMDDERYFNEMSAQGLRPRTVSSPIPYTPSP 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE2 SSSRPISPGLSYASHTVGFTPPTSLTRAGMSYYNSPGLHVQHMGTSHGITRPSPRRSNSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 SSSRPISPGLSYASHTVGFTPPTSLTRAGMSYYNSPGLHVQHMGTSHGITRPSPRRSNSP 370 380 390 400 410 420 430 440 450 460 470 pF1KE2 DKFKRPTPPPSPNTQTPVQPPPPPPPPPMQPTVPSAATSQPTPSQHSAHPSSQP :::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 DKFKRPTPPPSPNTQTPVQPPPPPPPPPMQPTVPSAATSQPTPSQHSAHPSSQP 430 440 450 460 470 474 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 15:30:04 2016 done: Sun Nov 6 15:30:06 2016 Total Scan time: 10.300 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]