FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2187, 474 aa 1>>>pF1KE2187 474 - 474 aa - 474 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 13.6538+/-0.0011; mu= -14.7526+/- 0.067 mean_var=576.4635+/-120.127, 0's: 0 Z-trim(117.8): 7 B-trim: 574 in 2/54 Lambda= 0.053418 statistics sampled from 18593 (18599) to 18593 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.807), E-opt: 0.2 (0.571), width: 16 Scan time: 3.910 The best scores are: opt bits E(32554) CCDS7257.1 CCDC6 gene_id:8030|Hs108|chr10 ( 474) 3113 254.0 2.6e-67 >>CCDS7257.1 CCDC6 gene_id:8030|Hs108|chr10 (474 aa) initn: 3113 init1: 3113 opt: 3113 Z-score: 1322.0 bits: 254.0 E(32554): 2.6e-67 Smith-Waterman score: 3113; 100.0% identity (100.0% similar) in 474 aa overlap (1-474:1-474) 10 20 30 40 50 60 pF1KE2 MADSASESDTDGAGGNSSSSAAMQSSCSSTSGGGGGGGGGGGGGKSGGIVISPFRLEELT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 MADSASESDTDGAGGNSSSSAAMQSSCSSTSGGGGGGGGGGGGGKSGGIVISPFRLEELT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 NRLASLQQENKVLKIELETYKLKCKALQEENRDLRKASVTIQARAEQEEEFISNTLFKKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 NRLASLQQENKVLKIELETYKLKCKALQEENRDLRKASVTIQARAEQEEEFISNTLFKKI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 QALQKEKETLAVNYEKEEEFLTNELSRKLMQLQHEKAELEQHLEQEQEFQVNKLMKKIKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 QALQKEKETLAVNYEKEEEFLTNELSRKLMQLQHEKAELEQHLEQEQEFQVNKLMKKIKK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 LENDTISKQLTLEQLRREKIDLENTLEQEQEALVNRLWKRMDKLEAEKRILQEKLDQPVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 LENDTISKQLTLEQLRREKIDLENTLEQEQEALVNRLWKRMDKLEAEKRILQEKLDQPVS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 APPSPRDISMEIDSPENMMRHIRFLKNEVERLKKQLRAAQLQHSEKMAQYLEEERHMREE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 APPSPRDISMEIDSPENMMRHIRFLKNEVERLKKQLRAAQLQHSEKMAQYLEEERHMREE 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 NLRLQRKLQREMERREALCRQLSESESSLEMDDERYFNEMSAQGLRPRTVSSPIPYTPSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 NLRLQRKLQREMERREALCRQLSESESSLEMDDERYFNEMSAQGLRPRTVSSPIPYTPSP 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE2 SSSRPISPGLSYASHTVGFTPPTSLTRAGMSYYNSPGLHVQHMGTSHGITRPSPRRSNSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 SSSRPISPGLSYASHTVGFTPPTSLTRAGMSYYNSPGLHVQHMGTSHGITRPSPRRSNSP 370 380 390 400 410 420 430 440 450 460 470 pF1KE2 DKFKRPTPPPSPNTQTPVQPPPPPPPPPMQPTVPSAATSQPTPSQHSAHPSSQP :::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 DKFKRPTPPPSPNTQTPVQPPPPPPPPPMQPTVPSAATSQPTPSQHSAHPSSQP 430 440 450 460 470 474 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 15:30:04 2016 done: Sun Nov 6 15:30:04 2016 Total Scan time: 3.910 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]