FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9609, 277 aa
  1>>>pF1KE9609 277 - 277 aa - 277 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.8510+/-0.00111; mu= 0.1481+/- 0.066
 mean_var=226.1779+/-45.565, 0's: 0 Z-trim(110.8): 17  B-trim: 0 in 0/52
 Lambda= 0.085280
 statistics sampled from 11889 (11897) to 11889 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.718), E-opt: 0.2 (0.365), width:  16
 Scan time:  2.740

The best scores are:                                      opt bits E(32554)
CCDS7249.1 ZWINT gene_id:11130|Hs108|chr10         ( 277) 1753 228.0 5.6e-60
CCDS31205.1 ZWINT gene_id:11130|Hs108|chr10        ( 230) 1072 144.2 8.1e-35


>>CCDS7249.1 ZWINT gene_id:11130|Hs108|chr10              (277 aa)
 initn: 1753 init1: 1753 opt: 1753  Z-score: 1190.3  bits: 228.0 E(32554): 5.6e-60
Smith-Waterman score: 1753; 99.6% identity (99.6% similar) in 277 aa overlap (1-277:1-277)

               10        20        30        40        50        60
pF1KE9 MEAAETEAEAAALEVLAEVAGILEPVGLQEEAELPAKILVEFVVDSQKKDKLLCSQLQVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MEAAETEAEAAALEVLAEVAGILEPVGLQEEAELPAKILVEFVVDSQKKDKLLCSQLQVA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 DFLQNILAQEDTAKGLDPLASEDTSRQKAIAAKEQWKELKATYREHVEAIKIGLTKALTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 DFLQNILAQEDTAKGLDPLASEDTSRQKAIAAKEQWKELKATYREHVEAIKIGLTKALTQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 MEEAQRKRTQLREAFEQLQAKKQMAMEKRRAVQNQWQLQQEKHLQHLAEVSAEVRERKTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MEEAQRKRTQLREAFEQLQAKKQMAMEKRRAVQNQWQLQQEKHLQHLAEVSAEVRERKTG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 TQQELDGVFQKLGNLKQQAEQERDKLQRYQTFLQLLYTLQGKLLFPEAEAEAENLPDDKP
       :::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 TQQELDRVFQKLGNLKQQAEQERDKLQRYQTFLQLLYTLQGKLLFPEAEAEAENLPDDKP
              190       200       210       220       230       240

              250       260       270       
pF1KE9 QQPTRPQEQSTGDTMGRDPGVSFKAVGLQPAGDVNLP
       :::::::::::::::::::::::::::::::::::::
CCDS72 QQPTRPQEQSTGDTMGRDPGVSFKAVGLQPAGDVNLP
              250       260       270       

>>CCDS31205.1 ZWINT gene_id:11130|Hs108|chr10             (230 aa)
 initn: 1072 init1: 1072 opt: 1072  Z-score: 738.5  bits: 144.2 E(32554): 8.1e-35
Smith-Waterman score: 1360; 83.0% identity (83.0% similar) in 277 aa overlap (1-277:1-230)

               10        20        30        40        50        60
pF1KE9 MEAAETEAEAAALEVLAEVAGILEPVGLQEEAELPAKILVEFVVDSQKKDKLLCSQLQVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MEAAETEAEAAALEVLAEVAGILEPVGLQEEAELPAKILVEFVVDSQKKDKLLCSQLQVA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 DFLQNILAQEDTAKGLDPLASEDTSRQKAIAAKEQWKELKATYREHVEAIKIGLTKALTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DFLQNILAQEDTAKGLDPLASEDTSRQKAIAAKEQWKELKATYREHVEAIKIGLTKALTQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 MEEAQRKRTQLREAFEQLQAKKQMAMEKRRAVQNQWQLQQEKHLQHLAEVSAEVRERKTG
       :::::::::::::::::::::::::::::::::::::::::::::::::::::       
CCDS31 MEEAQRKRTQLREAFEQLQAKKQMAMEKRRAVQNQWQLQQEKHLQHLAEVSAE-------
              130       140       150       160       170          

              190       200       210       220       230       240
pF1KE9 TQQELDGVFQKLGNLKQQAEQERDKLQRYQTFLQLLYTLQGKLLFPEAEAEAENLPDDKP
                                               ::::::::::::::::::::
CCDS31 ----------------------------------------GKLLFPEAEAEAENLPDDKP
                                                   180       190   

              250       260       270       
pF1KE9 QQPTRPQEQSTGDTMGRDPGVSFKAVGLQPAGDVNLP
       :::::::::::::::::::::::::::::::::::::
CCDS31 QQPTRPQEQSTGDTMGRDPGVSFKAVGLQPAGDVNLP
           200       210       220       230




277 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 06:42:05 2016 done: Sun Nov  6 06:42:06 2016
 Total Scan time:  2.740 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]