FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2230, 469 aa 1>>>pF1KE2230 469 - 469 aa - 469 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.8551+/-0.000918; mu= 15.0997+/- 0.055 mean_var=73.0208+/-14.547, 0's: 0 Z-trim(106.5): 21 B-trim: 0 in 0/50 Lambda= 0.150090 statistics sampled from 9031 (9048) to 9031 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.278), width: 16 Scan time: 2.560 The best scores are: opt bits E(32554) CCDS7130.1 NSUN6 gene_id:221078|Hs108|chr10 ( 469) 3109 682.6 2.4e-196 >>CCDS7130.1 NSUN6 gene_id:221078|Hs108|chr10 (469 aa) initn: 3109 init1: 3109 opt: 3109 Z-score: 3638.5 bits: 682.6 E(32554): 2.4e-196 Smith-Waterman score: 3109; 100.0% identity (100.0% similar) in 469 aa overlap (1-469:1-469) 10 20 30 40 50 60 pF1KE2 MSIFPKISLRPEVENYLKEGFMNKEIVTALGKQEAERKFETLLKHLSHPPSFTTVRVNTH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS71 MSIFPKISLRPEVENYLKEGFMNKEIVTALGKQEAERKFETLLKHLSHPPSFTTVRVNTH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 LASVQHVKNLLLDELQKQFNGLSVPILQHPDLQDVLLIPVIGPRKNIKKQQCEAIVGAQC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS71 LASVQHVKNLLLDELQKQFNGLSVPILQHPDLQDVLLIPVIGPRKNIKKQQCEAIVGAQC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 GNAVLRGAHVYAPGIVSASQFMKAGDVISVYSDIKGKCKKGAKEFDGTKVFLGNGISELS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS71 GNAVLRGAHVYAPGIVSASQFMKAGDVISVYSDIKGKCKKGAKEFDGTKVFLGNGISELS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 RKEIFSGLPELKGMGIRMTEPVYLSPSFDSVLPRYLFLQNLPSALVSHVLNPQPGEKILD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS71 RKEIFSGLPELKGMGIRMTEPVYLSPSFDSVLPRYLFLQNLPSALVSHVLNPQPGEKILD 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 LCAAPGGKTTHIAALMHDQGEVIALDKIFNKVEKIKQNALLLGLNSIRAFCFDGTKAVKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS71 LCAAPGGKTTHIAALMHDQGEVIALDKIFNKVEKIKQNALLLGLNSIRAFCFDGTKAVKL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 DMVEDTEGEPPFLPESFDRILLDAPCSGMGQRPNMACTWSVKEVASYQPLQRKLFTAAVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS71 DMVEDTEGEPPFLPESFDRILLDAPCSGMGQRPNMACTWSVKEVASYQPLQRKLFTAAVQ 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE2 LLKPEGVLVYSTCTITLAENEEQVAWALTKFPCLQLQPQEPQIGGEGMRGAGLSCEQLKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS71 LLKPEGVLVYSTCTITLAENEEQVAWALTKFPCLQLQPQEPQIGGEGMRGAGLSCEQLKQ 370 380 390 400 410 420 430 440 450 460 pF1KE2 LQRFDPSAVPLPDTDMDSLREARREDMLRLANKDSIGFFIAKFVKCKST ::::::::::::::::::::::::::::::::::::::::::::::::: CCDS71 LQRFDPSAVPLPDTDMDSLREARREDMLRLANKDSIGFFIAKFVKCKST 430 440 450 460 469 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 19:05:14 2016 done: Mon Nov 7 19:05:14 2016 Total Scan time: 2.560 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]