FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1972, 540 aa 1>>>pF1KE1972 540 - 540 aa - 540 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.8931+/-0.00103; mu= -6.8357+/- 0.061 mean_var=323.5670+/-69.848, 0's: 0 Z-trim(113.6): 67 B-trim: 0 in 0/54 Lambda= 0.071300 statistics sampled from 14143 (14196) to 14143 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.766), E-opt: 0.2 (0.436), width: 16 Scan time: 3.070 The best scores are: opt bits E(32554) CCDS7122.1 STAM gene_id:8027|Hs108|chr10 ( 540) 3588 382.9 5.1e-106 CCDS2196.1 STAM2 gene_id:10254|Hs108|chr2 ( 525) 1417 159.6 8.4e-39 >>CCDS7122.1 STAM gene_id:8027|Hs108|chr10 (540 aa) initn: 3588 init1: 3588 opt: 3588 Z-score: 2016.8 bits: 382.9 E(32554): 5.1e-106 Smith-Waterman score: 3588; 100.0% identity (100.0% similar) in 540 aa overlap (1-540:1-540) 10 20 30 40 50 60 pF1KE1 MPLFATNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS71 MPLFATNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS71 VAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 NDPQLSLISAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAKDPGTVANKKEEEDLAKAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS71 NDPQLSLISAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAKDPGTVANKKEEEDLAKAI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 ELSLKEQRQQSTTLSTLYPSTSSLLTNHQHEGRKVRAIYDFEAAEDNELTFKAGEIITVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS71 ELSLKEQRQQSTTLSTLYPSTSSLLTNHQHEGRKVRAIYDFEAAEDNELTFKAGEIITVL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 DDSDPNWWKGETHQGIGLFPSNFVTADLTAEPEMIKTEKKTVQFSDDVQVETIEPEPEPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS71 DDSDPNWWKGETHQGIGLFPSNFVTADLTAEPEMIKTEKKTVQFSDDVQVETIEPEPEPA 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 FIDEDKMDQLLQMLQSTDPSDDQPDLPELLHLEAMCHQMGPLIDEKLEDIDRKHSELSEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS71 FIDEDKMDQLLQMLQSTDPSDDQPDLPELLHLEAMCHQMGPLIDEKLEDIDRKHSELSEL 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 NVKVMEALSLYTKLMNEDPMYSMYAKLQNQPYYMQSSGVSGSQVYAGPPPSGAYLVAGNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS71 NVKVMEALSLYTKLMNEDPMYSMYAKLQNQPYYMQSSGVSGSQVYAGPPPSGAYLVAGNA 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE1 QMSHLQSYSLPPEQLSSLSQAVVPPSANPALPSQQTQAAYPNTMVSSVQGNTYPSQAPVY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS71 QMSHLQSYSLPPEQLSSLSQAVVPPSANPALPSQQTQAAYPNTMVSSVQGNTYPSQAPVY 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE1 SPPPAATAAAATADVTLYQNAGPNMPQVPNYNLTSSTLPQPGGSQQPPQPQQPYSQKALL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS71 SPPPAATAAAATADVTLYQNAGPNMPQVPNYNLTSSTLPQPGGSQQPPQPQQPYSQKALL 490 500 510 520 530 540 >>CCDS2196.1 STAM2 gene_id:10254|Hs108|chr2 (525 aa) initn: 1192 init1: 535 opt: 1417 Z-score: 810.1 bits: 159.6 E(32554): 8.4e-39 Smith-Waterman score: 1900; 56.3% identity (79.1% similar) in 540 aa overlap (1-533:1-523) 10 20 30 40 50 60 pF1KE1 MPLFATNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPH ::::..:::.:::::::.:.::.:::.::.:::::::.. .: ::::..::.::::: :: CCDS21 MPLFTANPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPH 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 VAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVL-NKGHPKVCEKLKALMVEWTDEF ::.::::::::::.::::::::::::::::.:: :. ::.:::::::::.:::::..:: CCDS21 VALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEF 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 KNDPQLSLISAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAKDPGTVANK-KEEEDLAK ..:::.::::: ::..::.:.::: :::.. : ::. :: .:: ::.::.:: CCDS21 QKDPQFSLISATIKSMKEEGITFPPAGSQTVSAA-------AKN-GTSSNKNKEDEDIAK 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 AIELSLKEQRQQSTTLSTLYPSTSSLLTNHQHEGRKVRAIYDFEAAEDNELTFKAGEIIT ::::::.::.:: : ..::::. :.:. .:::::.:::::.:::::::: :::: CCDS21 AIELSLQEQKQQHTETKSLYPSSEIQLNNKV--ARKVRALYDFEAVEDNELTFKHGEIII 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE1 VLDDSDPNWWKGETHQGIGLFPSNFVTADLTAEPEMIKTEKKTVQFSDDVQVETIEPEPE :::::: ::::::.:.:::::::::::..:. : : ..: .: ..:::. : . ::: CCDS21 VLDDSDANWWKGENHRGIGLFPSNFVTTNLNIETEAAAVDKLNV-IDDDVE-EIKKSEPE 240 250 260 270 280 300 310 320 330 340 350 pF1KE1 PAFIDEDKMDQLLQMLQSTDPSDDQPDLPELLHLEAMCHQMGPLIDEKLEDIDRKHSELS :..:::::::. ::.::: ::.:..:: .:: :: .:.::::.::::::.::::::::: CCDS21 PVYIDEDKMDRALQVLQSIDPTDSKPDSQDLLDLEDICQQMGPMIDEKLEEIDRKHSELS 290 300 310 320 330 340 360 370 380 390 400 410 pF1KE1 ELNVKVMEALSLYTKLMNEDPMYSMYAKLQNQPYYMQSSGVSGSQVYAGPPPSGAYLVAG ::::::.::: ::.::.:: :.::.:.::. .: .:. :.: .: :. . CCDS21 ELNVKVLEALELYNKLVNEAPVYSVYSKLHPPAHYPPASSGVPMQTYPVQSHGGNYMGQS 350 360 370 380 390 400 420 430 440 450 460 470 pF1KE1 NAQMSHLQSYSLPPEQLSSLSQAVVPPSANPALPSQQTQAAYPNTMVSSVQGNTYPSQAP :.. ::::: :.:.. : . .::..: .. .: .:..: .: ..:.. :: .: CCDS21 IHQVTVAQSYSLGPDQIGPLRS--LPPNVNSSVTAQPAQTSYLSTGQDTVSNPTYMNQNS 410 420 430 440 450 460 480 490 500 510 520 530 pF1KE1 VYSPPPAATA----AAATADVTLYQNAGPNMPQVPNYNLTSSTLP-QPGGSQQPPQPQQP . ..:: . ..:.. :::. :.::. .. . :.: .: ..:. ::: CCDS21 NLQSATGTTAYTQQMGMSVDMSSYQNTTSNLPQLAGFPV---TVPAHPVAQQHTNYHQQP 470 480 490 500 510 520 540 pF1KE1 YSQKALL CCDS21 LL 540 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 15:33:21 2016 done: Sun Nov 6 15:33:21 2016 Total Scan time: 3.070 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]