FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5314, 288 aa 1>>>pF1KE5314 288 - 288 aa - 288 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.8611+/-0.000787; mu= 13.5662+/- 0.048 mean_var=81.8846+/-16.826, 0's: 0 Z-trim(109.4): 12 B-trim: 56 in 1/51 Lambda= 0.141734 statistics sampled from 10879 (10883) to 10879 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.686), E-opt: 0.2 (0.334), width: 16 Scan time: 2.170 The best scores are: opt bits E(32554) CCDS7121.1 HACD1 gene_id:9200|Hs108|chr10 ( 288) 1887 395.0 3.2e-110 CCDS46895.1 HACD2 gene_id:201562|Hs108|chr3 ( 254) 1070 228.0 5.7e-60 CCDS45282.1 HACD3 gene_id:51495|Hs108|chr15 ( 362) 357 82.2 5.9e-16 CCDS43791.1 HACD4 gene_id:401494|Hs108|chr9 ( 232) 292 68.8 4.1e-12 >>CCDS7121.1 HACD1 gene_id:9200|Hs108|chr10 (288 aa) initn: 1887 init1: 1887 opt: 1887 Z-score: 2092.2 bits: 395.0 E(32554): 3.2e-110 Smith-Waterman score: 1887; 99.3% identity (99.7% similar) in 288 aa overlap (1-288:1-288) 10 20 30 40 50 60 pF1KE5 MGRLTEAAAAGSGSRAAGWAGSPPTLLPLSPTSPRCAATMASSDEDGTNGGASEAGEDRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS71 MGRLTEAAAAGSGSRAAGWAGSPPTLLPLSPTSPRCAATMASSDEDGTNGGASEAGEDRE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 APGKRRRLGFLATAWLTFYDIAMTAGWLVLAIAMVRFYMEKGTHRGLYKSIQKTLKFFQT :::.::::: :::::::::::::::::::::::::::::::::::::::::::::::::: CCDS71 APGERRRLGVLATAWLTFYDIAMTAGWLVLAIAMVRFYMEKGTHRGLYKSIQKTLKFFQT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 FALLEIVHCLIGIVPTSVIVTGVQVSSRIFMVWLITHSIKPIQNEESVVLFLVAWTVTEI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS71 FALLEIVHCLIGIVPTSVIVTGVQVSSRIFMVWLITHSIKPIQNEESVVLFLVAWTVTEI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 TRYSFYTFSLLDHLPYFIKWARYNFFIILYPVGVAGELLTIYAALPHVKKTGMFSIRLPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS71 TRYSFYTFSLLDHLPYFIKWARYNFFIILYPVGVAGELLTIYAALPHVKKTGMFSIRLPN 190 200 210 220 230 240 250 260 270 280 pF1KE5 KYNVSFDYYYFLLITMASYIPLFPQLYFHMLRQRRKVLHGEVIVEKDD :::::::::::::::::::::::::::::::::::::::::::::::: CCDS71 KYNVSFDYYYFLLITMASYIPLFPQLYFHMLRQRRKVLHGEVIVEKDD 250 260 270 280 >>CCDS46895.1 HACD2 gene_id:201562|Hs108|chr3 (254 aa) initn: 1095 init1: 1040 opt: 1070 Z-score: 1190.1 bits: 228.0 E(32554): 5.7e-60 Smith-Waterman score: 1070; 62.1% identity (87.1% similar) in 248 aa overlap (37-281:2-248) 10 20 30 40 50 60 pF1KE5 AAAAGSGSRAAGWAGSPPTLLPLSPTSPRCAATMASSDEDGTNGGASEAGEDREAPGKRR ::. :.. :..::...:: .: : :. CCDS46 MAAVAATAAAKGNGGGGGRAGAG-DASGTRK 10 20 30 70 80 90 100 110 120 pF1KE5 RLGF--LATAWLTFYDIAMTAGWLVLAIAMVRFYMEKGTHRGLYKSIQKTLKFFQTFALL . : ::::.:..:...:::::::.:...:: :. ::....:: ::.: :::::: ::: CCDS46 KKGPGPLATAYLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALL 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE5 EIVHCLIGIVPTSVIVTGVQVSSRIFMVWLITHSIKPIQNEESVVLFLVAWTVTEITRYS ::.:: :::::.::..:. :: ::.:..: .:::.: .:.:.::.::..:::.::: ::: CCDS46 EILHCAIGIVPSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIAWTITEIIRYS 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE5 FYTFSLLDHLPYFIKWARYNFFIILYPVGVAGELLTIYAALPHVKKTGMFSIRLPNKYNV :::::::.::::.::::::..::.:::.::.::::::::::: :...:..:: :::::: CCDS46 FYTFSLLNHLPYLIKWARYTLFIVLYPMGVSGELLTIYAALPFVRQAGLYSISLPNKYNF 160 170 180 190 200 210 250 260 270 280 pF1KE5 SFDYYYFLLITMASYIPLFPQLYFHMLRQRRKVL-HGEVIVEKDD ::::: ::.. : ::::.::::::::..::::.: : : CCDS46 SFDYYAFLILIMISYIPIFPQLYFHMIHQRRKILSHTEEHKKFE 220 230 240 250 >>CCDS45282.1 HACD3 gene_id:51495|Hs108|chr15 (362 aa) initn: 285 init1: 230 opt: 357 Z-score: 399.9 bits: 82.2 E(32554): 5.9e-16 Smith-Waterman score: 357; 27.8% identity (61.4% similar) in 223 aa overlap (60-276:134-352) 30 40 50 60 70 80 pF1KE5 SPTSPRCAATMASSDEDGTNGGASEAGEDREAPGKRRRLGFLATAWLTFYDIAMTAG--W :. :. . : : ..: .:.... : : CCDS45 APDFDRWLDESDAEMELRAKEEERLNKLRLESEGSPETLTNLRKGYLFMYNLVQFLGFSW 110 120 130 140 150 160 90 100 110 120 130 140 pF1KE5 LVLAIAMVRF-YMEKGTHRGLYKSIQKTLKFFQTFALLEIVHCLIGIVPTSVIVTGVQVS . . .. ::: . : . .... . : : .:..: .. ::.. . :. . .:. CCDS45 IFVNLT-VRFCILGKESFYDTFHTVADMMYFCQMLAVVETINAAIGVTTSPVLPSLIQLL 170 180 190 200 210 220 150 160 170 180 190 200 pF1KE5 SRIFMVWLITHSIKPIQNEESVVLFLVAWTVTEITRYSFYTFSLLDHLPYFIKWARYNFF .: :....: ... .::. : . . :.. :: ::::: .. .: . : ::... CCDS45 GRNFILFIIFGTMEEMQNKAVVFFVFYLWSAIEIFRYSFYMLTCIDMDWKVLTWLRYTLW 230 240 250 260 270 280 210 220 230 240 250 260 pF1KE5 IILYPVGVAGELLTIYAALPHVKKTGMFSIRLPNKYNVSFDYYYFLLITMASYIPLFPQL : :::.: .: ... ..: ..:: ::. :: ... . .:: : . : .: : CCDS45 IPLYPLGCLAEAVSVIQSIPIFNETGRFSFTLPYPVKIKVRFSFFLQIYL---IMIFLGL 290 300 310 320 330 270 280 pF1KE5 YF---HMLRQRRKVLHGEVIVEKDD :. :. .:::. CCDS45 YINFRHLYKQRRRRYGQKKKKIH 340 350 360 >>CCDS43791.1 HACD4 gene_id:401494|Hs108|chr9 (232 aa) initn: 246 init1: 226 opt: 292 Z-score: 331.0 bits: 68.8 E(32554): 4.1e-12 Smith-Waterman score: 292; 23.8% identity (59.0% similar) in 210 aa overlap (74-278:18-222) 50 60 70 80 90 100 pF1KE5 DEDGTNGGASEAGEDREAPGKRRRLGFLATAWLTFYDIAMTAG--WLVLAIAMVRFYMEK :.: .: . . : :. ... : . : CCDS43 MGPLALPAWLQPRYRKNAYLFIYYLIQFCGHSWIFTNMTVRFFSFGK 10 20 30 40 110 120 130 140 150 160 pF1KE5 GTHRGLYKSIQKTLKFFQTFALLEIVHCLIGIVPTSVIVTGVQVSSRIFMVWLITHSIKP . . .: .... :. .:::..: .:: . .. .:.. ::...... : . CCDS43 DSMVDTFYAIGLVMRLCQSVSLLELLHIYVGIESNHLLPRFLQLTERIIILFVVITSQEE 50 60 70 80 90 100 170 180 190 200 210 220 pF1KE5 IQNEESVVLFLVAWTVTEITRYSFYTFSLLDHLPYFIKWARYNFFIILYPVGVAGELLTI .:.. : ...: :.. ...::.. .:.. . : .... .::. : .: ..: CCDS43 VQEKYVVCVLFVFWNLLDMVRYTYSMLSVIGISYAVLTWLSQTLWMPIYPLCVLAEAFAI 110 120 130 140 150 160 230 240 250 260 270 pF1KE5 YAALPHVKKTGMFSIRLPNKYNVSFDYYYFLLITMASYIPLFPQLYF---HMLRQRRKVL : .::. .. : .: .:: .. : : . . : :: .:: :. .:: .: CCDS43 YQSLPYFESFGTYSTKLPFDLSIYFPYVLKIYLMM-----LFIGMYFTYSHLYSERRDIL 170 180 190 200 210 220 280 pF1KE5 HGEVIVEKDD CCDS43 GIFPIKKKKM 230 288 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 07:30:44 2016 done: Tue Nov 8 07:30:45 2016 Total Scan time: 2.170 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]