FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB9719, 402 aa 1>>>pF1KB9719 402 - 402 aa - 402 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.1282+/-0.000408; mu= 3.5004+/- 0.026 mean_var=373.5783+/-75.192, 0's: 0 Z-trim(123.3): 278 B-trim: 53 in 1/57 Lambda= 0.066356 statistics sampled from 42414 (42744) to 42414 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.806), E-opt: 0.2 (0.501), width: 16 Scan time: 9.870 The best scores are: opt bits E(85289) NP_055379 (OMIM: 221750,600577) LIM/homeobox prote ( 402) 2794 281.0 3.5e-75 NP_835258 (OMIM: 221750,600577) LIM/homeobox prote ( 397) 2606 263.0 9e-70 XP_005263467 (OMIM: 221750,600577) PREDICTED: LIM/ ( 386) 2599 262.3 1.4e-69 XP_016870657 (OMIM: 221750,600577) PREDICTED: LIM/ ( 373) 2596 262.0 1.7e-69 NP_203129 (OMIM: 262700,602146) LIM/homeobox prote ( 390) 1718 178.0 3.5e-44 XP_011508407 (OMIM: 262700,602146) PREDICTED: LIM/ ( 329) 1481 155.2 2.1e-37 XP_011508408 (OMIM: 262700,602146) PREDICTED: LIM/ ( 329) 1481 155.2 2.1e-37 XP_016858244 (OMIM: 262700,602146) PREDICTED: LIM/ ( 315) 1366 144.2 4.3e-34 XP_011508410 (OMIM: 262700,602146) PREDICTED: LIM/ ( 315) 1366 144.2 4.3e-34 NP_071758 (OMIM: 605992) LIM/homeobox protein Lhx5 ( 402) 556 66.8 1.1e-10 NP_005559 (OMIM: 601999) LIM/homeobox protein Lhx1 ( 406) 535 64.8 4.4e-10 NP_001167540 (OMIM: 600298) LIM homeobox transcrip ( 382) 482 59.7 1.4e-08 NP_796372 (OMIM: 600298) LIM homeobox transcriptio ( 382) 482 59.7 1.4e-08 NP_001229263 (OMIM: 608215) LIM/homeobox protein L ( 363) 469 58.4 3.3e-08 NP_001229262 (OMIM: 608215) LIM/homeobox protein L ( 366) 469 58.4 3.3e-08 NP_954629 (OMIM: 608215) LIM/homeobox protein Lhx6 ( 377) 469 58.4 3.4e-08 XP_011516824 (OMIM: 608215) PREDICTED: LIM/homeobo ( 378) 469 58.4 3.4e-08 NP_055183 (OMIM: 608215) LIM/homeobox protein Lhx6 ( 392) 469 58.4 3.4e-08 XP_011516823 (OMIM: 608215) PREDICTED: LIM/homeobo ( 407) 469 58.5 3.5e-08 XP_011507842 (OMIM: 600298) PREDICTED: LIM homeobo ( 279) 461 57.5 4.8e-08 XP_006717386 (OMIM: 603759) PREDICTED: LIM/homeobo ( 314) 461 57.5 5.1e-08 NP_004780 (OMIM: 603759) LIM/homeobox protein Lhx2 ( 406) 461 57.7 6e-08 NP_665804 (OMIM: 609481) insulin gene enhancer pro ( 359) 458 57.3 6.8e-08 XP_005245407 (OMIM: 606066) PREDICTED: LIM/homeobo ( 336) 457 57.2 6.9e-08 XP_016857338 (OMIM: 606066) PREDICTED: LIM/homeobo ( 378) 457 57.3 7.5e-08 NP_001014434 (OMIM: 606066) LIM/homeobox protein L ( 388) 457 57.3 7.6e-08 NP_064589 (OMIM: 606066) LIM/homeobox protein Lhx9 ( 397) 457 57.3 7.7e-08 XP_011508083 (OMIM: 606066) PREDICTED: LIM/homeobo ( 403) 457 57.3 7.7e-08 XP_016877994 (OMIM: 609481) PREDICTED: insulin gen ( 534) 458 57.6 8.6e-08 NP_001167617 (OMIM: 161200,602575) LIM homeobox tr ( 406) 454 57.0 9.5e-08 NP_001243043 (OMIM: 604425) LIM/homeobox protein L ( 346) 446 56.2 1.5e-07 NP_001001933 (OMIM: 604425) LIM/homeobox protein L ( 356) 446 56.2 1.5e-07 XP_016856805 (OMIM: 604425) PREDICTED: LIM/homeobo ( 363) 446 56.2 1.5e-07 XP_016856806 (OMIM: 604425) PREDICTED: LIM/homeobo ( 363) 446 56.2 1.5e-07 NP_002193 (OMIM: 600366) insulin gene enhancer pro ( 349) 431 54.7 4e-07 NP_002307 (OMIM: 161200,602575) LIM homeobox trans ( 395) 429 54.6 4.9e-07 NP_001167618 (OMIM: 161200,602575) LIM homeobox tr ( 402) 429 54.6 5e-07 XP_005251973 (OMIM: 608215) PREDICTED: LIM/homeobo ( 230) 421 53.5 6e-07 NP_001230539 (OMIM: 180386) LIM domain only protei ( 145) 412 52.4 8.3e-07 XP_011519065 (OMIM: 180386) PREDICTED: LIM domain ( 145) 412 52.4 8.3e-07 XP_006719174 (OMIM: 180386) PREDICTED: LIM domain ( 145) 412 52.4 8.3e-07 NP_061110 (OMIM: 180386) LIM domain only protein 3 ( 145) 412 52.4 8.3e-07 XP_011519064 (OMIM: 180386) PREDICTED: LIM domain ( 145) 412 52.4 8.3e-07 NP_001230538 (OMIM: 180386) LIM domain only protei ( 145) 412 52.4 8.3e-07 XP_006719173 (OMIM: 180386) PREDICTED: LIM domain ( 145) 412 52.4 8.3e-07 NP_001001395 (OMIM: 180386) LIM domain only protei ( 145) 412 52.4 8.3e-07 NP_001230540 (OMIM: 180386) LIM domain only protei ( 156) 412 52.5 8.6e-07 NP_001230541 (OMIM: 180386) LIM domain only protei ( 163) 412 52.5 8.9e-07 XP_011518400 (OMIM: 186921) PREDICTED: rhombotin-1 ( 145) 406 51.8 1.2e-06 XP_011518401 (OMIM: 186921) PREDICTED: rhombotin-1 ( 145) 406 51.8 1.2e-06 >>NP_055379 (OMIM: 221750,600577) LIM/homeobox protein L (402 aa) initn: 2794 init1: 2794 opt: 2794 Z-score: 1470.8 bits: 281.0 E(85289): 3.5e-75 Smith-Waterman score: 2794; 100.0% identity (100.0% similar) in 402 aa overlap (1-402:1-402) 10 20 30 40 50 60 pF1KB9 MEARGELGPARESAGGDLLLALLARRADLRREIPLCAGCDQHILDRFILKALDRHWHSKC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 MEARGELGPARESAGGDLLLALLARRADLRREIPLCAGCDQHILDRFILKALDRHWHSKC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 LKCSDCHTPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 LKCSDCHTPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 FACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 FACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 YNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 YNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSR 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 GGSKSDKDSVQEGQDSDAEVSFPDEPSLAEMGPANGLYGSLGEPTQALGRPSGALGNFSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 GGSKSDKDSVQEGQDSDAEVSFPDEPSLAEMGPANGLYGSLGEPTQALGRPSGALGNFSL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB9 EHGGLAGPEQYRELRPGSPYGVPPSPAAPQSLPGPQPLLSSLVYPDTSLGLVPSGAPGGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 EHGGLAGPEQYRELRPGSPYGVPPSPAAPQSLPGPQPLLSSLVYPDTSLGLVPSGAPGGP 310 320 330 340 350 360 370 380 390 400 pF1KB9 PPMRVLAGNGPSSDLSTGSSGGYPDFPASPASWLDEVDHAQF :::::::::::::::::::::::::::::::::::::::::: NP_055 PPMRVLAGNGPSSDLSTGSSGGYPDFPASPASWLDEVDHAQF 370 380 390 400 >>NP_835258 (OMIM: 221750,600577) LIM/homeobox protein L (397 aa) initn: 2606 init1: 2606 opt: 2606 Z-score: 1373.6 bits: 263.0 E(85289): 9e-70 Smith-Waterman score: 2606; 100.0% identity (100.0% similar) in 372 aa overlap (31-402:26-397) 10 20 30 40 50 60 pF1KB9 MEARGELGPARESAGGDLLLALLARRADLRREIPLCAGCDQHILDRFILKALDRHWHSKC :::::::::::::::::::::::::::::: NP_835 MLLETGLERDRARPGAAAVCTLGGTREIPLCAGCDQHILDRFILKALDRHWHSKC 10 20 30 40 50 70 80 90 100 110 120 pF1KB9 LKCSDCHTPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_835 LKCSDCHTPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHC 60 70 80 90 100 110 130 140 150 160 170 180 pF1KB9 FACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_835 FACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSA 120 130 140 150 160 170 190 200 210 220 230 240 pF1KB9 YNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_835 YNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSR 180 190 200 210 220 230 250 260 270 280 290 300 pF1KB9 GGSKSDKDSVQEGQDSDAEVSFPDEPSLAEMGPANGLYGSLGEPTQALGRPSGALGNFSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_835 GGSKSDKDSVQEGQDSDAEVSFPDEPSLAEMGPANGLYGSLGEPTQALGRPSGALGNFSL 240 250 260 270 280 290 310 320 330 340 350 360 pF1KB9 EHGGLAGPEQYRELRPGSPYGVPPSPAAPQSLPGPQPLLSSLVYPDTSLGLVPSGAPGGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_835 EHGGLAGPEQYRELRPGSPYGVPPSPAAPQSLPGPQPLLSSLVYPDTSLGLVPSGAPGGP 300 310 320 330 340 350 370 380 390 400 pF1KB9 PPMRVLAGNGPSSDLSTGSSGGYPDFPASPASWLDEVDHAQF :::::::::::::::::::::::::::::::::::::::::: NP_835 PPMRVLAGNGPSSDLSTGSSGGYPDFPASPASWLDEVDHAQF 360 370 380 390 >>XP_005263467 (OMIM: 221750,600577) PREDICTED: LIM/home (386 aa) initn: 2599 init1: 2599 opt: 2599 Z-score: 1370.1 bits: 262.3 E(85289): 1.4e-69 Smith-Waterman score: 2599; 100.0% identity (100.0% similar) in 371 aa overlap (32-402:16-386) 10 20 30 40 50 60 pF1KB9 EARGELGPARESAGGDLLLALLARRADLRREIPLCAGCDQHILDRFILKALDRHWHSKCL :::::::::::::::::::::::::::::: XP_005 MTLNMKETRWGAPAPEIPLCAGCDQHILDRFILKALDRHWHSKCL 10 20 30 40 70 80 90 100 110 120 pF1KB9 KCSDCHTPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 KCSDCHTPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCF 50 60 70 80 90 100 130 140 150 160 170 180 pF1KB9 ACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSAY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 ACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSAY 110 120 130 140 150 160 190 200 210 220 230 240 pF1KB9 NTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 NTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRG 170 180 190 200 210 220 250 260 270 280 290 300 pF1KB9 GSKSDKDSVQEGQDSDAEVSFPDEPSLAEMGPANGLYGSLGEPTQALGRPSGALGNFSLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GSKSDKDSVQEGQDSDAEVSFPDEPSLAEMGPANGLYGSLGEPTQALGRPSGALGNFSLE 230 240 250 260 270 280 310 320 330 340 350 360 pF1KB9 HGGLAGPEQYRELRPGSPYGVPPSPAAPQSLPGPQPLLSSLVYPDTSLGLVPSGAPGGPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 HGGLAGPEQYRELRPGSPYGVPPSPAAPQSLPGPQPLLSSLVYPDTSLGLVPSGAPGGPP 290 300 310 320 330 340 370 380 390 400 pF1KB9 PMRVLAGNGPSSDLSTGSSGGYPDFPASPASWLDEVDHAQF ::::::::::::::::::::::::::::::::::::::::: XP_005 PMRVLAGNGPSSDLSTGSSGGYPDFPASPASWLDEVDHAQF 350 360 370 380 >>XP_016870657 (OMIM: 221750,600577) PREDICTED: LIM/home (373 aa) initn: 2596 init1: 2596 opt: 2596 Z-score: 1368.7 bits: 262.0 E(85289): 1.7e-69 Smith-Waterman score: 2596; 99.5% identity (100.0% similar) in 372 aa overlap (31-402:2-373) 10 20 30 40 50 60 pF1KB9 MEARGELGPARESAGGDLLLALLARRADLRREIPLCAGCDQHILDRFILKALDRHWHSKC ..:::::::::::::::::::::::::::: XP_016 MQQIPLCAGCDQHILDRFILKALDRHWHSKC 10 20 30 70 80 90 100 110 120 pF1KB9 LKCSDCHTPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LKCSDCHTPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHC 40 50 60 70 80 90 130 140 150 160 170 180 pF1KB9 FACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 FACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSA 100 110 120 130 140 150 190 200 210 220 230 240 pF1KB9 YNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 YNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSR 160 170 180 190 200 210 250 260 270 280 290 300 pF1KB9 GGSKSDKDSVQEGQDSDAEVSFPDEPSLAEMGPANGLYGSLGEPTQALGRPSGALGNFSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GGSKSDKDSVQEGQDSDAEVSFPDEPSLAEMGPANGLYGSLGEPTQALGRPSGALGNFSL 220 230 240 250 260 270 310 320 330 340 350 360 pF1KB9 EHGGLAGPEQYRELRPGSPYGVPPSPAAPQSLPGPQPLLSSLVYPDTSLGLVPSGAPGGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 EHGGLAGPEQYRELRPGSPYGVPPSPAAPQSLPGPQPLLSSLVYPDTSLGLVPSGAPGGP 280 290 300 310 320 330 370 380 390 400 pF1KB9 PPMRVLAGNGPSSDLSTGSSGGYPDFPASPASWLDEVDHAQF :::::::::::::::::::::::::::::::::::::::::: XP_016 PPMRVLAGNGPSSDLSTGSSGGYPDFPASPASWLDEVDHAQF 340 350 360 370 >>NP_203129 (OMIM: 262700,602146) LIM/homeobox protein L (390 aa) initn: 1166 init1: 790 opt: 1718 Z-score: 914.3 bits: 178.0 E(85289): 3.5e-44 Smith-Waterman score: 1718; 66.3% identity (85.4% similar) in 377 aa overlap (31-402:25-390) 10 20 30 40 50 60 pF1KB9 MEARGELGPARESAGGDLLLALLARRADLRREIPLCAGCDQHILDRFILKALDRHWHSKC ..:: ::::.:::::.::::.:::::::.: NP_203 MMQSATVPAEGAVKGLPEMLGVPMQQIPQCAGCNQHILDKFILKVLDRHWHSSC 10 20 30 40 50 70 80 90 100 110 120 pF1KB9 LKCSDCHTPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHC :::.::. ::.:::::. :::::.::::::::::.::: :::::::::.:::::::::: NP_203 LKCADCQMQLADRCFSRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHC 60 70 80 90 100 110 130 140 150 160 170 pF1KB9 FACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE-AEATAKRPRTTITAKQLETLKS :::..:.::::::::::::::.::::: ::::::: . .:: :::::::::::::::::. NP_203 FACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLKN 120 130 140 150 160 170 180 190 200 210 220 230 pF1KB9 AYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRS ::..:::::::::::::::::::::::::::::::::::::::::::.::::.....::: NP_203 AYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRS 180 190 200 210 220 230 240 250 260 270 280 290 pF1KB9 RGGSKSDKDSVQEGQD-SDAEVSFPDEPSLAEMGPANGLYGSLGEPTQALGRPSGAL--G ::.::..:.: : ::.:.:: .. :.:.: .: .::..:. : .: : : NP_203 RGSSKQEKESSAEDCGVSDSELSFREDQILSELGHTNRIYGNVGDVT------GGQLMNG 240 250 260 270 280 300 310 320 330 340 350 pF1KB9 NFSLEHGGLAGPEQYRELRPGSPYGVPPSPAAPQSLPGPQPLLSSLVYP-DTSLGLVPSG .::.. : ..:..:: :::::.: ::.. .:::. :::..: : :..::.. . NP_203 SFSMDGTG----QSYQDLRDGSPYGIPQSPSSISSLPSHAPLLNGLDYTVDSNLGIIAHA 290 300 310 320 330 340 360 370 380 390 400 pF1KB9 APGGPPPMRVLAGNGPSSDLSTGSSGGYPDFPASPASWLDEVDHAQF . : .:..:: ::.::.::::: ::::::.::.:::::.:: : NP_203 GQGVSQTLRAMAG-GPTSDISTGSSVGYPDFPTSPGSWLDEMDHPPF 350 360 370 380 390 >>XP_011508407 (OMIM: 262700,602146) PREDICTED: LIM/home (329 aa) initn: 929 init1: 553 opt: 1481 Z-score: 792.4 bits: 155.2 E(85289): 2.1e-37 Smith-Waterman score: 1481; 65.7% identity (84.6% similar) in 338 aa overlap (70-402:3-329) 40 50 60 70 80 90 pF1KB9 DQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESVYCKDDFFKRFGTKCAACQ ::.:::::. :::::.::::::::::.::: XP_011 MQLADRCFSRAGSVYCKEDFFKRFGTKCTACQ 10 20 30 100 110 120 130 140 150 pF1KB9 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE-A :::::::::.:::::::::::::..:.::::::::::::::.::::: ::::::: . . XP_011 QGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDS 40 50 60 70 80 90 160 170 180 190 200 210 pF1KB9 EATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEK :: :::::::::::::::::.::..::::::::::::::::::::::::::::::::::: XP_011 EAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEK 100 110 120 130 140 150 220 230 240 250 260 270 pF1KB9 RLKKDAGRQRWGQYFRNMKRSRGGSKSDKDSVQEGQD-SDAEVSFPDEPSLAEMGPANGL ::::::::.::::.....:::::.::..:.: : ::.:.:: .. :.:.: .: . XP_011 RLKKDAGRHRWGQFYKSVKRSRGSSKQEKESSAEDCGVSDSELSFREDQILSELGHTNRI 160 170 180 190 200 210 280 290 300 310 320 330 pF1KB9 YGSLGEPTQALGRPSGAL--GNFSLEHGGLAGPEQYRELRPGSPYGVPPSPAAPQSLPGP ::..:. : .: : :.::.. : ..:..:: :::::.: ::.. .:::. XP_011 YGNVGDVT------GGQLMNGSFSMDGTG----QSYQDLRDGSPYGIPQSPSSISSLPSH 220 230 240 250 260 340 350 360 370 380 390 pF1KB9 QPLLSSLVYP-DTSLGLVPSGAPGGPPPMRVLAGNGPSSDLSTGSSGGYPDFPASPASWL :::..: : :..::.. .. : .:..:: ::.::.::::: ::::::.::.::: XP_011 APLLNGLDYTVDSNLGIIAHAGQGVSQTLRAMAG-GPTSDISTGSSVGYPDFPTSPGSWL 270 280 290 300 310 320 400 pF1KB9 DEVDHAQF ::.:: : XP_011 DEMDHPPF >>XP_011508408 (OMIM: 262700,602146) PREDICTED: LIM/home (329 aa) initn: 929 init1: 553 opt: 1481 Z-score: 792.4 bits: 155.2 E(85289): 2.1e-37 Smith-Waterman score: 1481; 65.7% identity (84.6% similar) in 338 aa overlap (70-402:3-329) 40 50 60 70 80 90 pF1KB9 DQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESVYCKDDFFKRFGTKCAACQ ::.:::::. :::::.::::::::::.::: XP_011 MQLADRCFSRAGSVYCKEDFFKRFGTKCTACQ 10 20 30 100 110 120 130 140 150 pF1KB9 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE-A :::::::::.:::::::::::::..:.::::::::::::::.::::: ::::::: . . XP_011 QGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDS 40 50 60 70 80 90 160 170 180 190 200 210 pF1KB9 EATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEK :: :::::::::::::::::.::..::::::::::::::::::::::::::::::::::: XP_011 EAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEK 100 110 120 130 140 150 220 230 240 250 260 270 pF1KB9 RLKKDAGRQRWGQYFRNMKRSRGGSKSDKDSVQEGQD-SDAEVSFPDEPSLAEMGPANGL ::::::::.::::.....:::::.::..:.: : ::.:.:: .. :.:.: .: . XP_011 RLKKDAGRHRWGQFYKSVKRSRGSSKQEKESSAEDCGVSDSELSFREDQILSELGHTNRI 160 170 180 190 200 210 280 290 300 310 320 330 pF1KB9 YGSLGEPTQALGRPSGAL--GNFSLEHGGLAGPEQYRELRPGSPYGVPPSPAAPQSLPGP ::..:. : .: : :.::.. : ..:..:: :::::.: ::.. .:::. XP_011 YGNVGDVT------GGQLMNGSFSMDGTG----QSYQDLRDGSPYGIPQSPSSISSLPSH 220 230 240 250 260 340 350 360 370 380 390 pF1KB9 QPLLSSLVYP-DTSLGLVPSGAPGGPPPMRVLAGNGPSSDLSTGSSGGYPDFPASPASWL :::..: : :..::.. .. : .:..:: ::.::.::::: ::::::.::.::: XP_011 APLLNGLDYTVDSNLGIIAHAGQGVSQTLRAMAG-GPTSDISTGSSVGYPDFPTSPGSWL 270 280 290 300 310 320 400 pF1KB9 DEVDHAQF ::.:: : XP_011 DEMDHPPF >>XP_016858244 (OMIM: 262700,602146) PREDICTED: LIM/home (315 aa) initn: 902 init1: 526 opt: 1366 Z-score: 733.1 bits: 144.2 E(85289): 4.3e-34 Smith-Waterman score: 1366; 64.6% identity (84.0% similar) in 319 aa overlap (89-402:8-315) 60 70 80 90 100 110 pF1KB9 KCLKCSDCHTPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHL .::::::.::: :::::::::.:::::::: XP_016 MEAERTRRRFGTKCTACQQGIPPTQVVRKAQDFVYHL 10 20 30 120 130 140 150 160 170 pF1KB9 HCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE-AEATAKRPRTTITAKQLETL :::::..:.::::::::::::::.::::: ::::::: . .:: :::::::::::::::: XP_016 HCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETL 40 50 60 70 80 90 180 190 200 210 220 230 pF1KB9 KSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMK :.::..:::::::::::::::::::::::::::::::::::::::::::.::::.....: XP_016 KNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVK 100 110 120 130 140 150 240 250 260 270 280 290 pF1KB9 RSRGGSKSDKDSVQEGQD-SDAEVSFPDEPSLAEMGPANGLYGSLGEPTQALGRPSGAL- ::::.::..:.: : ::.:.:: .. :.:.: .: .::..:. : .: : XP_016 RSRGSSKQEKESSAEDCGVSDSELSFREDQILSELGHTNRIYGNVGDVT------GGQLM 160 170 180 190 200 210 300 310 320 330 340 350 pF1KB9 -GNFSLEHGGLAGPEQYRELRPGSPYGVPPSPAAPQSLPGPQPLLSSLVYP-DTSLGLVP :.::.. : ..:..:: :::::.: ::.. .:::. :::..: : :..::.. XP_016 NGSFSMDGTG----QSYQDLRDGSPYGIPQSPSSISSLPSHAPLLNGLDYTVDSNLGIIA 220 230 240 250 260 360 370 380 390 400 pF1KB9 SGAPGGPPPMRVLAGNGPSSDLSTGSSGGYPDFPASPASWLDEVDHAQF .. : .:..:: ::.::.::::: ::::::.::.:::::.:: : XP_016 HAGQGVSQTLRAMAG-GPTSDISTGSSVGYPDFPTSPGSWLDEMDHPPF 270 280 290 300 310 >>XP_011508410 (OMIM: 262700,602146) PREDICTED: LIM/home (315 aa) initn: 902 init1: 526 opt: 1366 Z-score: 733.1 bits: 144.2 E(85289): 4.3e-34 Smith-Waterman score: 1366; 64.6% identity (84.0% similar) in 319 aa overlap (89-402:8-315) 60 70 80 90 100 110 pF1KB9 KCLKCSDCHTPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHL .::::::.::: :::::::::.:::::::: XP_011 MEAERTRRRFGTKCTACQQGIPPTQVVRKAQDFVYHL 10 20 30 120 130 140 150 160 170 pF1KB9 HCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE-AEATAKRPRTTITAKQLETL :::::..:.::::::::::::::.::::: ::::::: . .:: :::::::::::::::: XP_011 HCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETL 40 50 60 70 80 90 180 190 200 210 220 230 pF1KB9 KSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMK :.::..:::::::::::::::::::::::::::::::::::::::::::.::::.....: XP_011 KNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVK 100 110 120 130 140 150 240 250 260 270 280 290 pF1KB9 RSRGGSKSDKDSVQEGQD-SDAEVSFPDEPSLAEMGPANGLYGSLGEPTQALGRPSGAL- ::::.::..:.: : ::.:.:: .. :.:.: .: .::..:. : .: : XP_011 RSRGSSKQEKESSAEDCGVSDSELSFREDQILSELGHTNRIYGNVGDVT------GGQLM 160 170 180 190 200 210 300 310 320 330 340 350 pF1KB9 -GNFSLEHGGLAGPEQYRELRPGSPYGVPPSPAAPQSLPGPQPLLSSLVYP-DTSLGLVP :.::.. : ..:..:: :::::.: ::.. .:::. :::..: : :..::.. XP_011 NGSFSMDGTG----QSYQDLRDGSPYGIPQSPSSISSLPSHAPLLNGLDYTVDSNLGIIA 220 230 240 250 260 360 370 380 390 400 pF1KB9 SGAPGGPPPMRVLAGNGPSSDLSTGSSGGYPDFPASPASWLDEVDHAQF .. : .:..:: ::.::.::::: ::::::.::.:::::.:: : XP_011 HAGQGVSQTLRAMAG-GPTSDISTGSSVGYPDFPTSPGSWLDEMDHPPF 270 280 290 300 310 >>NP_071758 (OMIM: 605992) LIM/homeobox protein Lhx5 [Ho (402 aa) initn: 934 init1: 549 opt: 556 Z-score: 312.9 bits: 66.8 E(85289): 1.1e-10 Smith-Waterman score: 862; 38.7% identity (61.3% similar) in 419 aa overlap (36-396:5-398) 10 20 30 40 50 60 pF1KB9 ELGPARESAGGDLLLALLARRADLRREIPLCAGCDQHILDRFILKALDRHWHSKCLKCSD ::::.. :::::.:..::: :: ::..: . NP_071 MMVHCAGCERPILDRFLLNVLDRAWHIKCVQCCE 10 20 30 70 80 90 100 110 120 pF1KB9 CHTPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVV :.: :.:.:::: ..:::.:::.:::::::.: :: :...::.:.. :.::.::.:.: NP_071 CKTNLSEKCFSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMV 40 50 60 70 80 90 130 140 150 pF1KB9 CKRQLATGDEFYLMEDSRLVCKADY----------------------------------- :..::.::.:.:.......::: :: NP_071 CNKQLSTGEELYVIDENKFVCKDDYLSSSSLKEGSLNSVSSCTDRSLSPDLQDALQDDPK 100 110 120 130 140 150 160 170 180 190 pF1KB9 ----------ETAKQREAE---ATAKR-PRTTITAKQLETLKSAYNTSPKPARHVREQLS :::.... : .: .: ::::: ::::::::.:. ..:::.::.::::. NP_071 ETDNSTSSDKETANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLA 160 170 180 190 200 210 200 210 220 230 240 250 pF1KB9 SETGLDMRVVQVWFQNRRAKEKRLKK-DAGRQRWGQYFRNMKRSRG-GSKSDKDSVQEGQ .::::.:::.::::::::.::.:.:. .: : .::. .: : :.. :.. : NP_071 QETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPLGGRLDES---EML 220 230 240 250 260 270 260 270 280 290 300 310 pF1KB9 DSDAEVSFPDEPSLAEMGPANGLYGSLGEPTQALGRPSGALGNFSLEHGGLAGPEQYREL : . . : . .: . . : :.:: : : ..: : NP_071 GSTPYTYYGDYQGDYYAPGSNYDFFAHGPPSQA---QSPADSSFLAASG----------- 280 290 300 310 320 330 340 350 360 pF1KB9 RPGS-PYG-VPPSPAAPQSLPGPQPLLSSLVYPDTSLGLVPSGAPGGP----P-PMRVLA ::: : : . : :.:.. .:. . . . .::: :: :: : : : .:.. NP_071 -PGSTPLGALEPPLAGPHAADNPR-FTDMISHPDT-----PSPEPGLPGTLHPMPGEVFS 320 330 340 350 360 370 370 380 390 400 pF1KB9 GNGPSSDLSTGSSGGYPDFPASPASWLDEVDHAQF : ::: . ....:: . : :.: NP_071 G-GPSPPFPMSGTSGYSGPLSHPNPELNEAAVW 380 390 400 402 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 15:38:34 2016 done: Sun Nov 6 15:38:36 2016 Total Scan time: 9.870 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]