FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5540, 361 aa
  1>>>pF1KE5540 361 - 361 aa - 361 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.5833+/-0.000394; mu= -1.8549+/- 0.025
 mean_var=289.9726+/-59.327, 0's: 0 Z-trim(121.5): 40  B-trim: 421 in 2/59
 Lambda= 0.075317
 statistics sampled from 38204 (38271) to 38204 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.757), E-opt: 0.2 (0.449), width:  16
 Scan time:  8.350

The best scores are:                                      opt bits E(85289)
NP_006744 (OMIM: 185642) surfeit locus protein 6 i ( 361) 2313 264.4 2.9e-70
NP_001265871 (OMIM: 185642) surfeit locus protein  ( 197)  845 104.6 1.9e-22


>>NP_006744 (OMIM: 185642) surfeit locus protein 6 isofo  (361 aa)
 initn: 2313 init1: 2313 opt: 2313  Z-score: 1382.5  bits: 264.4 E(85289): 2.9e-70
Smith-Waterman score: 2313; 100.0% identity (100.0% similar) in 361 aa overlap (1-361:1-361)

               10        20        30        40        50        60
pF1KE5 MASLLAKDAYLQSLAKKICSHSAPEQQARTRAGKTQGSETAGPPKKKRKKTQKKFRKREE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MASLLAKDAYLQSLAKKICSHSAPEQQARTRAGKTQGSETAGPPKKKRKKTQKKFRKREE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 KAAEHKAKSLGEKSPAASGARRPEAAKEEAAWASSSAGNPADGLATEPESVFALDVLRQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 KAAEHKAKSLGEKSPAASGARRPEAAKEEAAWASSSAGNPADGLATEPESVFALDVLRQR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 LHEKIQEARGQGSAKELSPAALEKRRRRKQERDRKKRKRKELRAKEKARKAEEATEAQEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LHEKIQEARGQGSAKELSPAALEKRRRRKQERDRKKRKRKELRAKEKARKAEEATEAQEV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 VEATPEGACTEPREPPGLIFNKVEVSEDEPASKAQRRKEKRQRVKGNLTPLTGRNYRQLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 VEATPEGACTEPREPPGLIFNKVEVSEDEPASKAQRRKEKRQRVKGNLTPLTGRNYRQLL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 ERLQARQSRLDELRGQDEGKAQELEAKMKWTNLLYKAEGVKIRDDERLLQEALKRKEKRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 ERLQARQSRLDELRGQDEGKAQELEAKMKWTNLLYKAEGVKIRDDERLLQEALKRKEKRR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 AQRQRRWEKRTAGVVEKMQQRQDRRRQNLRRKKAARAERRLLRARKKGRILPQDLERAGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 AQRQRRWEKRTAGVVEKMQQRQDRRRQNLRRKKAARAERRLLRARKKGRILPQDLERAGL
              310       320       330       340       350       360

        
pF1KE5 V
       :
NP_006 V
        

>>NP_001265871 (OMIM: 185642) surfeit locus protein 6 is  (197 aa)
 initn: 913 init1: 836 opt: 845  Z-score: 523.8  bits: 104.6 E(85289): 1.9e-22
Smith-Waterman score: 852; 80.4% identity (87.2% similar) in 179 aa overlap (1-170:1-179)

               10        20        30        40        50        60
pF1KE5 MASLLAKDAYLQSLAKKICSHSAPEQQARTRAGKTQGSETAGPPKKKRKKTQKKFRKREE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASLLAKDAYLQSLAKKICSHSAPEQQARTRAGKTQGSETAGPPKKKRKKTQKKFRKREE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 KAAEHKAKSLGEKSPAASGARRPEAAKEEAAWASSSAGNPADGLATEPESVFALDVLRQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KAAEHKAKSLGEKSPAASGARRPEAAKEEAAWASSSAGNPADGLATEPESVFALDVLRQR
               70        80        90       100       110       120

              130            140          150        160       170 
pF1KE5 LHEKIQEARGQGSAKE--LSP---AALEKRR---RRKQERD-RKKRKRKELRAKEKARKA
       :::::::::::   .   : :   .. :.:    :: .::.  .::.  .::  .. :. 
NP_001 LHEKIQEARGQVVPRSCPLPPWRKGGGESRNGTGRRGSERSCGRKRRPGRLRRPRRPRRW
              130       140       150       160       170       180

             180       190       200       210       220       230 
pF1KE5 EEATEAQEVVEATPEGACTEPREPPGLIFNKVEVSEDEPASKAQRRKEKRQRVKGNLTPL
                                                                   
NP_001 WRQPQRGPARSRGSRPG                                           
              190                                                  




361 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 01:38:17 2016 done: Tue Nov  8 01:38:18 2016
 Total Scan time:  8.350 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]