FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3211, 479 aa
  1>>>pF1KE3211 479 - 479 aa - 479 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9969+/-0.000891; mu= 14.1969+/- 0.053
 mean_var=76.8922+/-15.511, 0's: 0 Z-trim(106.6): 29  B-trim: 0 in 0/50
 Lambda= 0.146263
 statistics sampled from 9058 (9084) to 9058 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.659), E-opt: 0.2 (0.279), width:  16
 Scan time:  3.250

The best scores are:                                      opt bits E(32554)
CCDS6954.1 AK8 gene_id:158067|Hs108|chr9           ( 479) 3205 686.0 2.4e-197
CCDS629.1 AK4 gene_id:205|Hs108|chr1               ( 223)  320 77.1 2.2e-14
CCDS6455.1 AK3 gene_id:50808|Hs108|chr9            ( 227)  307 74.3 1.5e-13


>>CCDS6954.1 AK8 gene_id:158067|Hs108|chr9                (479 aa)
 initn: 3205 init1: 3205 opt: 3205  Z-score: 3656.5  bits: 686.0 E(32554): 2.4e-197
Smith-Waterman score: 3205; 100.0% identity (100.0% similar) in 479 aa overlap (1-479:1-479)

               10        20        30        40        50        60
pF1KE3 MDATIAPHRIPPEMPQYGEENHIFELMQNMLEQLLIHQPEDPIPFMIQHLHRDNDNVPRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MDATIAPHRIPPEMPQYGEENHIFELMQNMLEQLLIHQPEDPIPFMIQHLHRDNDNVPRI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 VILGPPASGKTTIAMWLCKHLNSSLLTLENLILNEFSYTATEARRLYLQRKTVPSALLVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 VILGPPASGKTTIAMWLCKHLNSSLLTLENLILNEFSYTATEARRLYLQRKTVPSALLVQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 LIQERLAEEDCIKQGWILDGIPETREQALRIQTLGITPRHVIVLSAPDTVLIERNLGKRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 LIQERLAEEDCIKQGWILDGIPETREQALRIQTLGITPRHVIVLSAPDTVLIERNLGKRI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 DPQTGEIYHTTFDWPPESEIQNRLMVPEDISELETAQKLLEYHRNIVRVIPSYPKILKVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 DPQTGEIYHTTFDWPPESEIQNRLMVPEDISELETAQKLLEYHRNIVRVIPSYPKILKVI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 SADQPCVDVFYQALTYVQSNHRTNAPFTPRVLLLGPVGSGKSLQAALLAQKYRLVNVCCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 SADQPCVDVFYQALTYVQSNHRTNAPFTPRVLLLGPVGSGKSLQAALLAQKYRLVNVCCG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 QLLKEAVADRTTFGELIQPFFEKEMAVPDSLLMKVLSQRLDQQDCIQKGWVLHGVPRDLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 QLLKEAVADRTTFGELIQPFFEKEMAVPDSLLMKVLSQRLDQQDCIQKGWVLHGVPRDLD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 QAHLLNRLGYNPNRVFFLNVPFDSIMERLTLRRIDPVTGERYHLMYKPPPTMEIQARLLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 QAHLLNRLGYNPNRVFFLNVPFDSIMERLTLRRIDPVTGERYHLMYKPPPTMEIQARLLQ
              370       380       390       400       410       420

              430       440       450       460       470         
pF1KE3 NPKDAEEQVKLKMDLFYRNSADLEQLYGSAITLNGDQDPYTVFEYIESGIINPLPKKIP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 NPKDAEEQVKLKMDLFYRNSADLEQLYGSAITLNGDQDPYTVFEYIESGIINPLPKKIP
              430       440       450       460       470         

>>CCDS629.1 AK4 gene_id:205|Hs108|chr1                    (223 aa)
 initn: 337 init1: 151 opt: 320  Z-score: 371.7  bits: 77.1 E(32554): 2.2e-14
Smith-Waterman score: 320; 28.6% identity (60.4% similar) in 217 aa overlap (270-477:7-220)

     240       250       260       270       280       290         
pF1KE3 ISADQPCVDVFYQALTYVQSNHRTNAPFTPRVLLLGPVGSGKSLQAALLAQKYRLVNVCC
                                     :...::: ::::.     .::.. : ..  
CCDS62                         MASKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSS
                                       10        20        30      

     300       310       320       330       340       350         
pF1KE3 GQLLKEAVADRTTFGELIQPFFEKEMAVPDSLLMKVLSQRLDQQDCIQKGWVLHGVPRDL
       :..:.: .   :  ::. . ..:: . ::: .. ... ..:...    . :.: : :: :
CCDS62 GHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRR--GQHWLLDGFPRTL
         40        50        60        70        80          90    

     360       370       380       390       400       410         
pF1KE3 DQAHLLNRLGYNPNRVFFLNVPFDSIMERLTLRRIDPVTGERYHLMYKPPPTMEIQ----
        ::. :...  . . :. ::.::... .::. : : : .:. :.: ..:: .  :.    
CCDS62 GQAEALDKIC-EVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTG
          100        110       120       130       140       150   

         420       430       440       450         460          470
pF1KE3 ARLLQNPKDAEEQVKLKMDLFYRNSADLEQLYGSAITLN--GDQDPYTVFEYIE---SGI
         :.:.  :  : :  ..  .   .  . .:: :  .:.  .  .   .. :.    :. 
CCDS62 EPLVQQEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTETNKIWPYVYTLFSNK
           160       170       180       190       200       210   

                 
pF1KE3 INPLPKKIP 
       :.:. .:   
CCDS62 ITPIQSKEAY
           220   

>>CCDS6455.1 AK3 gene_id:50808|Hs108|chr9                 (227 aa)
 initn: 272 init1: 120 opt: 307  Z-score: 356.8  bits: 74.3 E(32554): 1.5e-13
Smith-Waterman score: 307; 27.4% identity (60.9% similar) in 215 aa overlap (270-477:9-219)

     240       250       260       270       280       290         
pF1KE3 ISADQPCVDVFYQALTYVQSNHRTNAPFTPRVLLLGPVGSGKSLQAALLAQKYRLVNVCC
                                     :....:  ::::.  .. .. ...: ..  
CCDS64                       MGASARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS
                                     10        20        30        

     300       310       320       330       340       350         
pF1KE3 GQLLKEAVADRTTFGELIQPFFEKEMAVPDSLLMKVLSQRLDQQDCIQKGWVLHGVPRDL
       :.::.. .   : .: : . :...   .::... ..  ..:  ..  : .:.: : :: :
CCDS64 GDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHEL--KNLTQYSWLLDGFPRTL
       40        50        60        70          80        90      

     360       370       380       390       400       410         
pF1KE3 DQAHLLNRLGYNPNRVFFLNVPFDSIMERLTLRRIDPVTGERYHLMYKPPPTMEIQ----
        ::. :.: .:. . :. :::::. : .::: : : :..:. :.. ..:: :. :.    
CCDS64 PQAEALDR-AYQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTG
        100        110       120       130       140       150     

         420       430       440          450       460       470  
pF1KE3 ARLLQNPKDAEEQVKLKMDLFYRNSADLEQLY---GSAITLNGDQDPYTVFEYIESGIIN
         :.:   :  : :  ..  .  ..  . . :   :   :..: .    .. :. . . .
CCDS64 EPLIQREDDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGTETN-KIWPYVYAFLQT
         160       170       180       190       200        210    

                    
pF1KE3 PLPKKIP      
        .:..        
CCDS64 KVPQRSQKASVTP
          220       




479 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 06:00:42 2016 done: Sun Nov  6 06:00:43 2016
 Total Scan time:  3.250 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]