FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3108, 277 aa 1>>>pF1KE3108 277 - 277 aa - 277 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4484+/-0.000738; mu= 14.4007+/- 0.045 mean_var=65.5677+/-13.169, 0's: 0 Z-trim(108.3): 9 B-trim: 0 in 0/50 Lambda= 0.158391 statistics sampled from 10142 (10150) to 10142 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.691), E-opt: 0.2 (0.312), width: 16 Scan time: 2.220 The best scores are: opt bits E(32554) CCDS6944.1 UCK1 gene_id:83549|Hs108|chr9 ( 277) 1856 432.6 1.5e-121 CCDS59152.1 UCK1 gene_id:83549|Hs108|chr9 ( 282) 1773 413.6 7.9e-116 CCDS59151.1 UCK1 gene_id:83549|Hs108|chr9 ( 268) 1604 375.0 3.2e-104 CCDS1252.1 UCK2 gene_id:7371|Hs108|chr1 ( 261) 1191 280.6 8e-76 CCDS48046.1 UCK1 gene_id:83549|Hs108|chr9 ( 201) 1115 263.2 1.1e-70 CCDS54479.1 UCKL1 gene_id:54963|Hs108|chr20 ( 533) 694 167.2 2.3e-41 CCDS13547.1 UCKL1 gene_id:54963|Hs108|chr20 ( 548) 694 167.2 2.3e-41 >>CCDS6944.1 UCK1 gene_id:83549|Hs108|chr9 (277 aa) initn: 1856 init1: 1856 opt: 1856 Z-score: 2295.6 bits: 432.6 E(32554): 1.5e-121 Smith-Waterman score: 1856; 100.0% identity (100.0% similar) in 277 aa overlap (1-277:1-277) 10 20 30 40 50 60 pF1KE3 MASAGGEDCESPAPEADRPHQRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 MASAGGEDCESPAPEADRPHQRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 ILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 ILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 SRLPETTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDVRRGRDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 SRLPETTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDVRRGRDL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 EQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNGDICKWHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 EQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNGDICKWHR 190 200 210 220 230 240 250 260 270 pF1KE3 GGSNGRSYKRTFSEPGDHPGMLTSGKRSHLESSSRPH ::::::::::::::::::::::::::::::::::::: CCDS69 GGSNGRSYKRTFSEPGDHPGMLTSGKRSHLESSSRPH 250 260 270 >>CCDS59152.1 UCK1 gene_id:83549|Hs108|chr9 (282 aa) initn: 1789 init1: 1606 opt: 1773 Z-score: 2192.9 bits: 413.6 E(32554): 7.9e-116 Smith-Waterman score: 1773; 95.4% identity (96.5% similar) in 282 aa overlap (1-277:1-282) 10 20 30 40 50 pF1KE3 MASAGGEDCESPAPEADRPHQRPFLIG---VSGGTA--SGKSTVCEKIMELLGQNEVEQR ::::::::::::::::::::::::::: ..: .::::::::::::::::::: CCDS59 MASAGGEDCESPAPEADRPHQRPFLIGDERFQAGIPLLCLQSTVCEKIMELLGQNEVEQR 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE3 QRKVVILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 QRKVVILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTY 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE3 DFVTHSRLPETTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDVR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 DFVTHSRLPETTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDVR 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE3 RGRDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNGDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 RGRDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNGDI 190 200 210 220 230 240 240 250 260 270 pF1KE3 CKWHRGGSNGRSYKRTFSEPGDHPGMLTSGKRSHLESSSRPH :::::::::::::::::::::::::::::::::::::::::: CCDS59 CKWHRGGSNGRSYKRTFSEPGDHPGMLTSGKRSHLESSSRPH 250 260 270 280 >>CCDS59151.1 UCK1 gene_id:83549|Hs108|chr9 (268 aa) initn: 1787 init1: 1604 opt: 1604 Z-score: 1984.6 bits: 375.0 E(32554): 3.2e-104 Smith-Waterman score: 1773; 96.8% identity (96.8% similar) in 277 aa overlap (1-277:1-268) 10 20 30 40 50 60 pF1KE3 MASAGGEDCESPAPEADRPHQRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVV ::::::::::::::::::::::::::: :::::::::::::::::::::::: CCDS59 MASAGGEDCESPAPEADRPHQRPFLIG---------STVCEKIMELLGQNEVEQRQRKVV 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 ILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 ILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTH 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE3 SRLPETTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDVRRGRDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 SRLPETTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDVRRGRDL 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE3 EQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNGDICKWHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 EQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNGDICKWHR 180 190 200 210 220 230 250 260 270 pF1KE3 GGSNGRSYKRTFSEPGDHPGMLTSGKRSHLESSSRPH ::::::::::::::::::::::::::::::::::::: CCDS59 GGSNGRSYKRTFSEPGDHPGMLTSGKRSHLESSSRPH 240 250 260 >>CCDS1252.1 UCK2 gene_id:7371|Hs108|chr1 (261 aa) initn: 1208 init1: 808 opt: 1191 Z-score: 1474.7 bits: 280.6 E(32554): 8e-76 Smith-Waterman score: 1195; 69.5% identity (85.3% similar) in 272 aa overlap (8-277:4-261) 10 20 30 40 50 pF1KE3 MASAGGEDCESPAPEADRPHQ-RPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKV : :. . ..:. .:::::::::::::::.:: ::..:::::::. ::..: CCDS12 MAGDSEQTLQNHQQPNGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQV 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 VILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVT :::::: ::.:::.::::::::::.::::::::::.:. .:::.:.:::::..:.::::. CCDS12 VILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVS 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 HSRLPETTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDV-RRGR ::: ::..:::::::::::::.:::::.::.:...::::::.:.:::::::::. .::: CCDS12 HSRKEETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGR 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE3 DLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNGDICKW ::::::.:: :::::::::::::::::::::::::.::.:::::::::::::::: CCDS12 DLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDILNG----- 180 190 200 210 220 230 240 250 260 270 pF1KE3 HRGGSNGRSYKRTFSEPGDHPGMLTSGKRSHLESSSRPH : : ..: : :. : ::. ::::::: CCDS12 ------GPSKRQT---NGCLNGYTPSRKRQASESSSRPH 240 250 260 >>CCDS48046.1 UCK1 gene_id:83549|Hs108|chr9 (201 aa) initn: 1115 init1: 1115 opt: 1115 Z-score: 1382.6 bits: 263.2 E(32554): 1.1e-70 Smith-Waterman score: 1115; 100.0% identity (100.0% similar) in 169 aa overlap (1-169:1-169) 10 20 30 40 50 60 pF1KE3 MASAGGEDCESPAPEADRPHQRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 MASAGGEDCESPAPEADRPHQRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 ILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 ILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 SRLPETTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDVRRGRDL ::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 SRLPETTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRDKEVCRCDHPA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 EQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNGDICKWHR CCDS48 RSGQYGCHQPDRAAHPGHSEW 190 200 >>CCDS54479.1 UCKL1 gene_id:54963|Hs108|chr20 (533 aa) initn: 700 init1: 426 opt: 694 Z-score: 856.1 bits: 167.2 E(32554): 2.3e-41 Smith-Waterman score: 694; 49.1% identity (78.3% similar) in 212 aa overlap (21-231:81-285) 10 20 30 40 50 pF1KE3 MASAGGEDCESPAPEADRPHQRPFLIGVSGGTASGKSTVCEKIMELLGQN .. : ::..::.::::.:: . :.: : CCDS54 KSEPPLLRTSKRTIYTAGRPPWYNEHGTQSKEAFAIGLGGGSASGKTTVARMIIEAL--- 60 70 80 90 100 60 70 80 90 100 110 pF1KE3 EVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTV .: ::.::.: :::::: .:. .: ....::::::::: ::. :::.. .::.: CCDS54 DVPW----VVLLSMDSFYKVLTEQQQEQAAHNNFNFDHPDAFDFDLIISTLKKLKQGKSV 110 120 130 140 150 160 120 130 140 150 160 170 pF1KE3 EVPTYDFVTHSRLPETTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRV .:: :::.:::: . ..: :.:..::::..: .. . ... ...:::::::.:: ::. CCDS54 KVPIYDFTTHSRKKDWKTLYGANVIIFEGIMAFADKTLLELLDMKIFVDTDSDIRLVRRL 170 180 190 200 210 220 180 190 200 210 220 pF1KE3 LRDV-RRGRDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQD ::. .::::.: .. ::. ::::.:... :: . ::...::: : :::.:::::... CCDS54 RRDISERGRDIEGVIKQYNKFVKPSFDQYIQPTMRLADIVVPRGSGNTVAIDLIVQHVHS 230 240 250 260 270 280 230 240 250 260 270 pF1KE3 ILNGDICKWHRGGSNGRSYKRTFSEPGDHPGMLTSGKRSHLESSSRPH : CCDS54 QLEERELSVRAALASAHQCHPLPRTLSVLKSTPQVRGMHTIIRDKETSRDEFIFYSKRLM 290 300 310 320 330 340 >>CCDS13547.1 UCKL1 gene_id:54963|Hs108|chr20 (548 aa) initn: 700 init1: 426 opt: 694 Z-score: 855.9 bits: 167.2 E(32554): 2.3e-41 Smith-Waterman score: 694; 49.1% identity (78.3% similar) in 212 aa overlap (21-231:96-300) 10 20 30 40 50 pF1KE3 MASAGGEDCESPAPEADRPHQRPFLIGVSGGTASGKSTVCEKIMELLGQN .. : ::..::.::::.:: . :.: : CCDS13 KSEPPLLRTSKRTIYTAGRPPWYNEHGTQSKEAFAIGLGGGSASGKTTVARMIIEAL--- 70 80 90 100 110 120 60 70 80 90 100 110 pF1KE3 EVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTV .: ::.::.: :::::: .:. .: ....::::::::: ::. :::.. .::.: CCDS13 DVPW----VVLLSMDSFYKVLTEQQQEQAAHNNFNFDHPDAFDFDLIISTLKKLKQGKSV 130 140 150 160 170 120 130 140 150 160 170 pF1KE3 EVPTYDFVTHSRLPETTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRV .:: :::.:::: . ..: :.:..::::..: .. . ... ...:::::::.:: ::. CCDS13 KVPIYDFTTHSRKKDWKTLYGANVIIFEGIMAFADKTLLELLDMKIFVDTDSDIRLVRRL 180 190 200 210 220 230 180 190 200 210 220 pF1KE3 LRDV-RRGRDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQD ::. .::::.: .. ::. ::::.:... :: . ::...::: : :::.:::::... CCDS13 RRDISERGRDIEGVIKQYNKFVKPSFDQYIQPTMRLADIVVPRGSGNTVAIDLIVQHVHS 240 250 260 270 280 290 230 240 250 260 270 pF1KE3 ILNGDICKWHRGGSNGRSYKRTFSEPGDHPGMLTSGKRSHLESSSRPH : CCDS13 QLEERELSVRAALASAHQCHPLPRTLSVLKSTPQVRGMHTIIRDKETSRDEFIFYSKRLM 300 310 320 330 340 350 277 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 15:39:40 2016 done: Sun Nov 6 15:39:41 2016 Total Scan time: 2.220 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]