FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9711, 367 aa
  1>>>pF1KB9711 367 - 367 aa - 367 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.1681+/-0.00105; mu= 3.5209+/- 0.062
 mean_var=240.8108+/-51.064, 0's: 0 Z-trim(111.1): 833  B-trim: 6 in 1/51
 Lambda= 0.082649
 statistics sampled from 11124 (12092) to 11124 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.371), width:  16
 Scan time:  2.700

The best scores are:                                      opt bits E(32554)
CCDS6934.1 PRDM12 gene_id:59335|Hs108|chr9         ( 367) 2485 309.4 3.1e-84


>>CCDS6934.1 PRDM12 gene_id:59335|Hs108|chr9              (367 aa)
 initn: 2485 init1: 2485 opt: 2485  Z-score: 1625.7  bits: 309.4 E(32554): 3.1e-84
Smith-Waterman score: 2485; 100.0% identity (100.0% similar) in 367 aa overlap (1-367:1-367)

               10        20        30        40        50        60
pF1KB9 MMGSVLPAEALVLKTGLKAPGLALAEVITSDILHSFLYGRWRNVLGEQLFEDKSHHASPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MMGSVLPAEALVLKTGLKAPGLALAEVITSDILHSFLYGRWRNVLGEQLFEDKSHHASPK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 TAFTAEVLAQSFSGEVQKLSSLVLPAEVIIAQSSIPGEGLGIFSKTWIKAGTEMGPFTGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 TAFTAEVLAQSFSGEVQKLSSLVLPAEVIIAQSSIPGEGLGIFSKTWIKAGTEMGPFTGR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 VIAPEHVDICKNNNLMWEVFNEDGTVRYFIDASQEDHRSWMTYIKCARNEQEQNLEVVQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 VIAPEHVDICKNNNLMWEVFNEDGTVRYFIDASQEDHRSWMTYIKCARNEQEQNLEVVQI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 GTSIFYKAIEMIPPDQELLVWYGNSHNTFLGIPGVPGLEEDQKKNKHEDFHPADSAAGPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 GTSIFYKAIEMIPPDQELLVWYGNSHNTFLGIPGVPGLEEDQKKNKHEDFHPADSAAGPA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 GRMRCVICHRGFNSRSNLRSHMRIHTLDKPFVCRFCNRRFSQSSTLRNHVRLHTGERPYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 GRMRCVICHRGFNSRSNLRSHMRIHTLDKPFVCRFCNRRFSQSSTLRNHVRLHTGERPYK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 CQVCQSAYSQLAGLRAHQKSARHRPPSTALQAHSPALPAPHAHAPALAAAAAAAAAAAAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 CQVCQSAYSQLAGLRAHQKSARHRPPSTALQAHSPALPAPHAHAPALAAAAAAAAAAAAH
              310       320       330       340       350       360

              
pF1KB9 HLPAMVL
       :::::::
CCDS69 HLPAMVL
              




367 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 01:30:36 2016 done: Tue Nov  8 01:30:36 2016
 Total Scan time:  2.700 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]