FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3092, 262 aa 1>>>pF1KE3092 262 - 262 aa - 262 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.0058+/-0.00108; mu= 11.6692+/- 0.065 mean_var=75.7059+/-14.868, 0's: 0 Z-trim(103.4): 19 B-trim: 84 in 2/48 Lambda= 0.147404 statistics sampled from 7366 (7371) to 7366 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.588), E-opt: 0.2 (0.226), width: 16 Scan time: 2.220 The best scores are: opt bits E(32554) CCDS6840.1 MRRF gene_id:92399|Hs108|chr9 ( 262) 1637 357.6 5.1e-99 CCDS48013.1 MRRF gene_id:92399|Hs108|chr9 ( 201) 1167 257.6 5e-69 CCDS55336.1 MRRF gene_id:92399|Hs108|chr9 ( 210) 916 204.2 6e-53 >>CCDS6840.1 MRRF gene_id:92399|Hs108|chr9 (262 aa) initn: 1637 init1: 1637 opt: 1637 Z-score: 1891.1 bits: 357.6 E(32554): 5.1e-99 Smith-Waterman score: 1637; 100.0% identity (100.0% similar) in 262 aa overlap (1-262:1-262) 10 20 30 40 50 60 pF1KE3 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 KAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 KAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 VVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 VVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 PIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIRLIEKQISQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 PIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIRLIEKQISQ 190 200 210 220 230 240 250 260 pF1KE3 MADDTVAELDRHLAVKTKELLG :::::::::::::::::::::: CCDS68 MADDTVAELDRHLAVKTKELLG 250 260 >>CCDS48013.1 MRRF gene_id:92399|Hs108|chr9 (201 aa) initn: 1245 init1: 1167 opt: 1167 Z-score: 1352.8 bits: 257.6 E(32554): 5e-69 Smith-Waterman score: 1167; 98.4% identity (99.5% similar) in 187 aa overlap (1-187:1-187) 10 20 30 40 50 60 pF1KE3 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 KAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 KAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 VVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 VVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 PIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIRLIEKQISQ :::: .. CCDS48 PIPQSAKWPMTQWQNWTGIWQ 190 200 >>CCDS55336.1 MRRF gene_id:92399|Hs108|chr9 (210 aa) initn: 916 init1: 916 opt: 916 Z-score: 1064.0 bits: 204.2 E(32554): 6e-53 Smith-Waterman score: 1208; 80.2% identity (80.2% similar) in 262 aa overlap (1-262:1-210) 10 20 30 40 50 60 pF1KE3 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 KAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIA : ::::::: CCDS55 K----------------------------------------------------GSLDKIA 130 140 150 160 170 180 pF1KE3 VVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 VVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRV 70 80 90 100 110 120 190 200 210 220 230 240 pF1KE3 PIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIRLIEKQISQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 PIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIRLIEKQISQ 130 140 150 160 170 180 250 260 pF1KE3 MADDTVAELDRHLAVKTKELLG :::::::::::::::::::::: CCDS55 MADDTVAELDRHLAVKTKELLG 190 200 210 262 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 05:13:27 2016 done: Sun Nov 6 05:13:27 2016 Total Scan time: 2.220 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]