FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1724, 234 aa 1>>>pF1KE1724 234 - 234 aa - 234 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8686+/-0.000359; mu= 16.2425+/- 0.022 mean_var=53.8284+/-10.658, 0's: 0 Z-trim(113.9): 13 B-trim: 433 in 1/54 Lambda= 0.174811 statistics sampled from 23454 (23461) to 23454 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.662), E-opt: 0.2 (0.275), width: 16 Scan time: 5.200 The best scores are: opt bits E(85289) NP_001235 (OMIM: 603875) tumor necrosis factor lig ( 234) 1547 397.8 8.4e-111 NP_001239219 (OMIM: 603875) tumor necrosis factor ( 164) 915 238.3 5.9e-63 >>NP_001235 (OMIM: 603875) tumor necrosis factor ligand (234 aa) initn: 1547 init1: 1547 opt: 1547 Z-score: 2110.3 bits: 397.8 E(85289): 8.4e-111 Smith-Waterman score: 1547; 100.0% identity (100.0% similar) in 234 aa overlap (1-234:1-234) 10 20 30 40 50 60 pF1KE1 MDPGLQQALNGMAPPGDTAMHVPAGSVASHLGTTSRSYFYLTTATLALCLVFTVATIMVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MDPGLQQALNGMAPPGDTAMHVPAGSVASHLGTTSRSYFYLTTATLALCLVFTVATIMVL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VVQRTDSIPNSPDNVPLKGGNCSEDLLCILKRAPFKKSWAYLQVAKHLNKTKLSWNKDGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VVQRTDSIPNSPDNVPLKGGNCSEDLLCILKRAPFKKSWAYLQVAKHLNKTKLSWNKDGI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LHGVRYQDGNLVIQFPGLYFIICQLQFLVQCPNNSVDLKLELLINKHIKKQALVTVCESG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LHGVRYQDGNLVIQFPGLYFIICQLQFLVQCPNNSVDLKLELLINKHIKKQALVTVCESG 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 MQTKHVYQNLSQFLLDYLQVNTTISVNVDTFQYIDTSTFPLENVLSIFLYSNSD :::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MQTKHVYQNLSQFLLDYLQVNTTISVNVDTFQYIDTSTFPLENVLSIFLYSNSD 190 200 210 220 230 >>NP_001239219 (OMIM: 603875) tumor necrosis factor liga (164 aa) initn: 915 init1: 915 opt: 915 Z-score: 1251.2 bits: 238.3 E(85289): 5.9e-63 Smith-Waterman score: 915; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136) 10 20 30 40 50 60 pF1KE1 MDPGLQQALNGMAPPGDTAMHVPAGSVASHLGTTSRSYFYLTTATLALCLVFTVATIMVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MDPGLQQALNGMAPPGDTAMHVPAGSVASHLGTTSRSYFYLTTATLALCLVFTVATIMVL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VVQRTDSIPNSPDNVPLKGGNCSEDLLCILKRAPFKKSWAYLQVAKHLNKTKLSWNKDGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VVQRTDSIPNSPDNVPLKGGNCSEDLLCILKRAPFKKSWAYLQVAKHLNKTKLSWNKDGI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LHGVRYQDGNLVIQFPGLYFIICQLQFLVQCPNNSVDLKLELLINKHIKKQALVTVCESG :::::::::::::::: NP_001 LHGVRYQDGNLVIQFPDYCGMILHHSHSTLDSGKGHCCLETLQP 130 140 150 160 234 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 15:42:47 2016 done: Sun Nov 6 15:42:47 2016 Total Scan time: 5.200 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]