FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1724, 234 aa 1>>>pF1KE1724 234 - 234 aa - 234 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8208+/-0.00076; mu= 16.4877+/- 0.046 mean_var=53.9143+/-10.636, 0's: 0 Z-trim(107.2): 14 B-trim: 4 in 1/51 Lambda= 0.174672 statistics sampled from 9434 (9441) to 9434 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.29), width: 16 Scan time: 1.860 The best scores are: opt bits E(32554) CCDS6810.1 TNFSF8 gene_id:944|Hs108|chr9 ( 234) 1547 397.4 4.1e-111 CCDS75884.1 TNFSF8 gene_id:944|Hs108|chr9 ( 164) 915 238.1 2.7e-63 >>CCDS6810.1 TNFSF8 gene_id:944|Hs108|chr9 (234 aa) initn: 1547 init1: 1547 opt: 1547 Z-score: 2108.3 bits: 397.4 E(32554): 4.1e-111 Smith-Waterman score: 1547; 100.0% identity (100.0% similar) in 234 aa overlap (1-234:1-234) 10 20 30 40 50 60 pF1KE1 MDPGLQQALNGMAPPGDTAMHVPAGSVASHLGTTSRSYFYLTTATLALCLVFTVATIMVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 MDPGLQQALNGMAPPGDTAMHVPAGSVASHLGTTSRSYFYLTTATLALCLVFTVATIMVL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VVQRTDSIPNSPDNVPLKGGNCSEDLLCILKRAPFKKSWAYLQVAKHLNKTKLSWNKDGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 VVQRTDSIPNSPDNVPLKGGNCSEDLLCILKRAPFKKSWAYLQVAKHLNKTKLSWNKDGI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LHGVRYQDGNLVIQFPGLYFIICQLQFLVQCPNNSVDLKLELLINKHIKKQALVTVCESG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 LHGVRYQDGNLVIQFPGLYFIICQLQFLVQCPNNSVDLKLELLINKHIKKQALVTVCESG 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 MQTKHVYQNLSQFLLDYLQVNTTISVNVDTFQYIDTSTFPLENVLSIFLYSNSD :::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 MQTKHVYQNLSQFLLDYLQVNTTISVNVDTFQYIDTSTFPLENVLSIFLYSNSD 190 200 210 220 230 >>CCDS75884.1 TNFSF8 gene_id:944|Hs108|chr9 (164 aa) initn: 915 init1: 915 opt: 915 Z-score: 1249.9 bits: 238.1 E(32554): 2.7e-63 Smith-Waterman score: 915; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136) 10 20 30 40 50 60 pF1KE1 MDPGLQQALNGMAPPGDTAMHVPAGSVASHLGTTSRSYFYLTTATLALCLVFTVATIMVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 MDPGLQQALNGMAPPGDTAMHVPAGSVASHLGTTSRSYFYLTTATLALCLVFTVATIMVL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VVQRTDSIPNSPDNVPLKGGNCSEDLLCILKRAPFKKSWAYLQVAKHLNKTKLSWNKDGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 VVQRTDSIPNSPDNVPLKGGNCSEDLLCILKRAPFKKSWAYLQVAKHLNKTKLSWNKDGI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LHGVRYQDGNLVIQFPGLYFIICQLQFLVQCPNNSVDLKLELLINKHIKKQALVTVCESG :::::::::::::::: CCDS75 LHGVRYQDGNLVIQFPDYCGMILHHSHSTLDSGKGHCCLETLQP 130 140 150 160 234 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 15:42:46 2016 done: Sun Nov 6 15:42:46 2016 Total Scan time: 1.860 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]