FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1748, 251 aa 1>>>pF1KE1748 251 - 251 aa - 251 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6296+/-0.000809; mu= 12.5496+/- 0.048 mean_var=62.2583+/-12.274, 0's: 0 Z-trim(106.7): 15 B-trim: 0 in 0/49 Lambda= 0.162546 statistics sampled from 9139 (9149) to 9139 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.281), width: 16 Scan time: 1.930 The best scores are: opt bits E(32554) CCDS6809.1 TNFSF15 gene_id:9966|Hs108|chr9 ( 251) 1687 404.0 5e-113 >>CCDS6809.1 TNFSF15 gene_id:9966|Hs108|chr9 (251 aa) initn: 1687 init1: 1687 opt: 1687 Z-score: 2142.6 bits: 404.0 E(32554): 5e-113 Smith-Waterman score: 1687; 100.0% identity (100.0% similar) in 251 aa overlap (1-251:1-251) 10 20 30 40 50 60 pF1KE1 MAEDLGLSFGETASVEMLPEHGSCRPKARSSSARWALTCCLVLLPFLAGLTTYLLVSQLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 MAEDLGLSFGETASVEMLPEHGSCRPKARSSSARWALTCCLVLLPFLAGLTTYLLVSQLR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 AQGEACVQFQALKGQEFAPSHQQVYAPLRADGDKPRAHLTVVRQTPTQHFKNQFPALHWE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 AQGEACVQFQALKGQEFAPSHQQVYAPLRADGDKPRAHLTVVRQTPTQHFKNQFPALHWE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 HELGLAFTKNRMNYTNKFLLIPESGDYFIYSQVTFRGMTSECSEIRQAGRPNKPDSITVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 HELGLAFTKNRMNYTNKFLLIPESGDYFIYSQVTFRGMTSECSEIRQAGRPNKPDSITVV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 ITKVTDSYPEPTQLLMGTKSVCEVGSNWFQPIYLGAMFSLQEGDKLMVNVSDISLVDYTK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 ITKVTDSYPEPTQLLMGTKSVCEVGSNWFQPIYLGAMFSLQEGDKLMVNVSDISLVDYTK 190 200 210 220 230 240 250 pF1KE1 EDKTFFGAFLL ::::::::::: CCDS68 EDKTFFGAFLL 250 251 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 15:43:21 2016 done: Sun Nov 6 15:43:21 2016 Total Scan time: 1.930 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]