FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5281, 251 aa 1>>>pF1KE5281 251 - 251 aa - 251 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2283+/-0.000723; mu= 14.8825+/- 0.044 mean_var=61.8305+/-12.422, 0's: 0 Z-trim(108.2): 19 B-trim: 0 in 0/50 Lambda= 0.163107 statistics sampled from 10014 (10029) to 10014 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.698), E-opt: 0.2 (0.308), width: 16 Scan time: 2.150 The best scores are: opt bits E(32554) CCDS6793.1 HDHD3 gene_id:81932|Hs108|chr9 ( 251) 1724 413.9 5.4e-116 >>CCDS6793.1 HDHD3 gene_id:81932|Hs108|chr9 (251 aa) initn: 1724 init1: 1724 opt: 1724 Z-score: 2196.0 bits: 413.9 E(32554): 5.4e-116 Smith-Waterman score: 1724; 100.0% identity (100.0% similar) in 251 aa overlap (1-251:1-251) 10 20 30 40 50 60 pF1KE5 MAHRLQIRLLTWDVKDTLLRLRHPLGEAYATKARAHGLEVEPSALEQGFRQAYRAQSHSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS67 MAHRLQIRLLTWDVKDTLLRLRHPLGEAYATKARAHGLEVEPSALEQGFRQAYRAQSHSF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 PNYGLSHGLTSRQWWLDVVLQTFHLAGVQDAQAVAPIAEQLYKDFSHPCTWQVLDGAEDT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS67 PNYGLSHGLTSRQWWLDVVLQTFHLAGVQDAQAVAPIAEQLYKDFSHPCTWQVLDGAEDT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 LRECRTRGLRLAVISNFDRRLEGILGGLGLREHFDFVLTSEAAGWPKPDPRIFQEALRLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS67 LRECRTRGLRLAVISNFDRRLEGILGGLGLREHFDFVLTSEAAGWPKPDPRIFQEALRLA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 HMEPVVAAHVGDNYLCDYQGPRAVGMHSFLVVGPQALDPVVRDSVPKEHILPSLAHLLPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS67 HMEPVVAAHVGDNYLCDYQGPRAVGMHSFLVVGPQALDPVVRDSVPKEHILPSLAHLLPA 190 200 210 220 230 240 250 pF1KE5 LDCLEGSTPGL ::::::::::: CCDS67 LDCLEGSTPGL 250 251 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:23:07 2016 done: Mon Nov 7 23:23:07 2016 Total Scan time: 2.150 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]