(Circular) (Six-base) MAPSORT of: pFN21AE5320.seq Check: 7878 from: 1 to: 5578 pFN21AE5320 5578 bp With 182 enzymes: SgfI * December 8, 2014 13:46 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 2453 2453 Size: 5578 AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3388 278 Size: 53 83 186 936 1852 2468 Fragments arranged by size: 2468 1852 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2203 2921 1937 Size: 266 718 4594 Fragments arranged by size: 4594 718 266 Acc65I G'GTAC_C Cuts at: 2468 2899 2468 Size: 431 5147 AclI AA'CG_TT Cuts at: 1563 3705 4078 1563 Size: 2142 373 3063 Fragments arranged by size: 3063 2142 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2555 3641 5025 5293 1632 Size: 923 1086 1384 268 1917 Fragments arranged by size: 1917 1384 1086 923 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5381 AflIII A'CryG_T Cuts at: 1203 4477 5454 1203 Size: 3274 977 1327 Fragments arranged by size: 3274 1327 977 AgeI A'CCGG_T Cuts at: 4409 4409 Size: 5578 AhdI GACnn_n'nnGTC Cuts at: 4307 4307 Size: 5578 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5578 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5578 AlwNI CAG_nnn'CTG Cuts at: 2605 3321 4893 2605 Size: 716 1572 3290 Fragments arranged by size: 3290 1572 716 ApaI G_GGCC'C Cuts at: 2455 2455 Size: 5578 ApaLI G'TGCA_C Cuts at: 3635 4791 3635 Size: 1156 4422 ApoI r'AATT_y Cuts at: 1493 2190 2482 2887 3113 3265 5374 1493 Size: 697 292 405 226 152 2109 1697 Fragments arranged by size: 2109 1697 697 405 292 226 152 AseI AT'TA_AT Cuts at: 160 1032 4132 160 Size: 872 3100 1606 Fragments arranged by size: 3100 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5578 AvaI C'yCGr_G Cuts at: 1870 1943 2454 2903 1870 Size: 73 511 449 4545 Fragments arranged by size: 4545 511 449 73 BamHI G'GATC_C Cuts at: 2908 3275 2908 Size: 367 5211 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2468 2899 4354 618 Size: 325 217 627 681 431 1455 1842 Fragments arranged by size: 1842 1455 681 627 431 325 217 BanII G_rGCy'C Cuts at: 1391 2455 2897 1391 Size: 1064 442 4072 Fragments arranged by size: 4072 1064 442 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4607 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3769 3803 1903 Size: 34 1832 34 3678 Fragments arranged by size: 3678 1832 34 34 BciVI GTATCCnnnnn_n' Cuts at: 2710 3470 4680 2710 Size: 760 1210 3608 Fragments arranged by size: 3608 1210 760 BclI T'GATC_A Cuts at: 1548 1548 Size: 5578 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4189 136 Size: 107 122 71 631 605 2517 1525 Fragments arranged by size: 2517 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5573 5573 Size: 5578 BlpI GC'TnA_GC Cuts at: 2995 2995 Size: 5578 Bme1580I G_kGCm'C Cuts at: 1790 2455 3639 4795 1790 Size: 665 1184 1156 2573 Fragments arranged by size: 2573 1184 1156 665 BmgBI CAC'GTC Cuts at: 1318 2049 1318 Size: 731 4847 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3309 4267 442 Size: 416 53 83 399 24 1892 958 1753 Fragments arranged by size: 1892 1753 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5578 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 4238 1239 Size: 2999 2579 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3703 4568 4866 3703 Size: 865 298 4415 Fragments arranged by size: 4415 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4241 882 Size: 617 2742 2219 Fragments arranged by size: 2742 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3369 493 Size: 711 2165 2702 Fragments arranged by size: 2702 2165 711 BsaBI GATnn'nnATC Cuts at: 5572 5572 Size: 5578 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3385 3767 4402 275 Size: 53 83 186 936 1852 382 635 1451 Fragments arranged by size: 1852 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 4011 4409 4683 4830 5241 4011 Size: 398 274 147 411 4348 Fragments arranged by size: 4348 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2689 2719 1178 Size: 30 165 30 1286 30 4037 Fragments arranged by size: 4037 1286 165 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 5578 BseYI C'CCAG_C Cuts at: 2566 2598 4781 5277 2566 Size: 32 2183 496 2867 Fragments arranged by size: 2867 2183 496 32 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2481 1163 Size: 573 745 4260 Fragments arranged by size: 4260 745 573 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 3028 3789 4817 1540 Size: 275 186 1027 761 1028 2301 Fragments arranged by size: 2301 1028 1027 761 275 186 BsiHKAI G_wGCw'C Cuts at: 3639 3724 4795 3639 Size: 85 1071 4422 Fragments arranged by size: 4422 1071 85 BsmI GAATG_Cn' Cuts at: 3089 3182 3089 Size: 93 5485 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2455 2897 3639 3724 4795 1391 Size: 399 665 442 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 665 442 399 85 BspEI T'CCGG_A Cuts at: 5241 5241 Size: 5578 BspHI T'CATG_A Cuts at: 2433 3467 5197 2433 Size: 1034 1730 2814 Fragments arranged by size: 2814 1730 1034 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2453 2933 844 Size: 1609 480 3489 Fragments arranged by size: 3489 1609 480 BsrBI CCG'CTC Cuts at: 1394 1823 3465 1394 Size: 429 1642 3507 Fragments arranged by size: 3507 1642 429 BsrDI GCAATG_nn' Cuts at: 65 1248 4073 4247 65 Size: 1183 2825 174 1396 Fragments arranged by size: 2825 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2824 4222 4409 1700 Size: 110 1014 1398 187 2869 Fragments arranged by size: 2869 1398 1014 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5578 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5578 BssSI C'ACGA_G Cuts at: 3638 4650 3638 Size: 1012 4566 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5578 BstBI TT'CG_AA Cuts at: 4382 4382 Size: 5578 BstEII G'GTnAC_C Cuts at: 1184 2557 1184 Size: 1373 4205 BstXI CCAn_nnnn'nTGG Cuts at: 2180 2180 Size: 5578 BstYI r'GATC_y Cuts at: 1972 2908 3275 3660 3677 5129 5215 5227 5573 Size: 936 367 385 17 1452 86 12 346 Cuts at: 5573 1972 Size: 1977 Fragments arranged by size: 1977 1452 936 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 2015 513 Size: 552 939 11 4076 Fragments arranged by size: 4076 939 552 11 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 2056 487 Size: 683 56 830 4009 Fragments arranged by size: 4009 830 683 56 BtsI GCAGTG_nn' Cuts at: 3094 3888 3908 3094 Size: 794 20 4764 Fragments arranged by size: 4764 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5578 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5543 DraI TTT'AAA Cuts at: 2882 2882 Size: 5578 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4585 809 Size: 507 3269 1802 Fragments arranged by size: 3269 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2655 3025 3914 Size: 54 1425 50 275 18 825 370 889 Cuts at: 3914 5543 8 Size: 1629 43 Fragments arranged by size: 1629 1425 889 825 370 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 3025 1537 Size: 275 1213 4090 Fragments arranged by size: 4090 1213 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3508 1353 Size: 2155 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4165 4539 4685 387 Size: 1064 138 2576 374 146 1280 Fragments arranged by size: 2576 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2555 3641 4238 5025 5293 1239 Size: 393 923 1086 597 787 268 1524 Fragments arranged by size: 1524 1086 923 787 597 393 268 EcoRI G'AATT_C Cuts at: 2887 3265 2887 Size: 378 5200 FspI TGC'GCA Cuts at: 4084 4084 Size: 5578 HaeII r_GCGC'y Cuts at: 1678 4725 1678 Size: 3047 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2689 2721 2822 2854 4219 Size: 32 135 32 1117 32 101 32 1365 Cuts at: 4219 4251 4293 4325 1373 Size: 32 42 32 2626 Fragments arranged by size: 2626 1365 1117 135 101 42 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2922 3168 669 Size: 988 281 984 246 3079 Fragments arranged by size: 3079 988 984 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5578 HpaI GTT'AAC Cuts at: 3168 3168 Size: 5578 KpnI G_GTAC'C Cuts at: 2472 2903 2472 Size: 431 5147 MfeI C'AATT_G Cuts at: 3177 3177 Size: 5578 MluI A'CGCG_T Cuts at: 5454 5454 Size: 5578 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2708 4692 4876 1305 Size: 1403 1984 184 2007 Fragments arranged by size: 2007 1984 1403 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2657 10 Size: 54 1425 343 825 2931 Fragments arranged by size: 2931 1425 825 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2051 2131 3536 3895 4054 518 Size: 648 885 80 1405 359 159 2042 Fragments arranged by size: 2042 1405 885 648 359 159 80 MspA1I CmG'CkG Cuts at: 1606 2123 2994 3671 4819 5064 1606 Size: 517 871 677 1148 245 2120 Fragments arranged by size: 2120 1148 871 677 517 245 NcoI C'CATG_G Cuts at: 513 1065 2004 2015 513 Size: 552 939 11 4076 Fragments arranged by size: 4076 939 552 11 NdeI CA'TA_TG Cuts at: 387 387 Size: 5578 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5578 NotI GC'GGCC_GC Cuts at: 3025 3025 Size: 5578 NspI r_CATG'y Cuts at: 1132 1229 2402 2936 4481 1132 Size: 97 1173 534 1545 2229 Fragments arranged by size: 2229 1545 1173 534 97 PasI CC'CwG_GG Cuts at: 1348 2311 1348 Size: 963 4615 PciI A'CATG_T Cuts at: 4477 4477 Size: 5578 PflMI CCAn_nnn'nTGG Cuts at: 1108 2373 2605 1108 Size: 1265 232 4081 Fragments arranged by size: 4081 1265 232 PmeI GTTT'AAAC Cuts at: 2882 2882 Size: 5578 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3647 3679 5160 5192 3647 Size: 32 1481 32 4033 Fragments arranged by size: 4033 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5578 PsiI TTA'TAA Cuts at: 2477 3148 2477 Size: 671 4907 PspOMI G'GGCC_C Cuts at: 2451 2451 Size: 5578 PstI C_TGCA'G Cuts at: 830 2930 830 Size: 2100 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5578 PvuII CAG'CTG Cuts at: 2123 2123 Size: 5578 SalI G'TCGA_C Cuts at: 1936 2920 1936 Size: 984 4594 SbfI CC_TGCA'GG Cuts at: 2930 2930 Size: 5578 ScaI AGT'ACT Cuts at: 3826 5538 3826 Size: 1712 3866 SfcI C'TryA_G Cuts at: 826 1045 2926 4061 4742 4933 826 Size: 219 1881 1135 681 191 1471 Fragments arranged by size: 1881 1471 1135 681 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5578 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5578 SmaI CCC'GGG Cuts at: 1872 2905 1872 Size: 1033 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3682 4583 4845 820 Size: 197 926 1739 901 262 1553 Fragments arranged by size: 1739 1553 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3369 493 Size: 2876 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5578 SphI G_CATG'C Cuts at: 1132 2936 1132 Size: 1804 3774 SspI AAT'ATT Cuts at: 5 52 3502 5 Size: 47 3450 2081 Fragments arranged by size: 3450 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5578 StyI C'CwwG_G Cuts at: 513 1065 2004 2015 2553 3017 513 Size: 552 939 11 538 464 3074 Fragments arranged by size: 3074 939 552 538 464 11 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2612 3605 3622 3775 3960 4405 325 Size: 1255 1032 993 17 153 185 445 1498 Fragments arranged by size: 1498 1255 1032 993 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3824 5536 96 Size: 274 80 33 51 1443 1847 1712 138 Fragments arranged by size: 1847 1712 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5538 5570 5538 Size: 32 5546 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5578 XbaI T'CTAG_A Cuts at: 2914 2914 Size: 5578 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2180 2650 2180 Size: 470 5108 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5578 XmaI C'CCGG_G Cuts at: 1870 2903 1870 Size: 1033 4545 XmnI GAAnn'nnTTC Cuts at: 3707 3707 Size: 5578 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3386 276 Size: 53 83 186 936 1852 2468 Fragments arranged by size: 2468 1852 936 186 83 53 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PspOMI PstI PvuI PvuII SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AfeI AloI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoO109I EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspXI PsrI RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI