FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6635, 247 aa 1>>>pF1KE6635 247 - 247 aa - 247 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2826+/-0.000828; mu= 14.0928+/- 0.050 mean_var=57.1942+/-11.387, 0's: 0 Z-trim(105.9): 15 B-trim: 0 in 0/50 Lambda= 0.169589 statistics sampled from 8666 (8673) to 8666 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.655), E-opt: 0.2 (0.266), width: 16 Scan time: 1.670 The best scores are: opt bits E(32554) CCDS6760.1 NIPSNAP3A gene_id:25934|Hs108|chr9 ( 247) 1677 418.4 2.3e-117 CCDS6761.1 NIPSNAP3B gene_id:55335|Hs108|chr9 ( 247) 1492 373.1 9.6e-104 CCDS5521.1 GBAS gene_id:2631|Hs108|chr7 ( 286) 244 67.8 9e-12 CCDS13860.1 NIPSNAP1 gene_id:8508|Hs108|chr22 ( 284) 233 65.1 5.8e-11 >>CCDS6760.1 NIPSNAP3A gene_id:25934|Hs108|chr9 (247 aa) initn: 1677 init1: 1677 opt: 1677 Z-score: 2220.7 bits: 418.4 E(32554): 2.3e-117 Smith-Waterman score: 1677; 100.0% identity (100.0% similar) in 247 aa overlap (1-247:1-247) 10 20 30 40 50 60 pF1KE6 MLVLRSALTRALASRTLAPQMCSSFATGPRQYDGIFYEFRSYYLKPSKMNEFLENFEKNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS67 MLVLRSALTRALASRTLAPQMCSSFATGPRQYDGIFYEFRSYYLKPSKMNEFLENFEKNA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 HLRTAHSELVGYWSVEFGGRMNTVFHIWKYDNFAHRTEVRKALAKDKEWQEQFLIPNLAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS67 HLRTAHSELVGYWSVEFGGRMNTVFHIWKYDNFAHRTEVRKALAKDKEWQEQFLIPNLAL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 IDKQESEITYLVPWCKLEKPPKEGVYELATFQMKPGGPALWGDAFKRAVHAHVNLGYTKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS67 IDKQESEITYLVPWCKLEKPPKEGVYELATFQMKPGGPALWGDAFKRAVHAHVNLGYTKL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 VGVFHTEYGALNRVHVLWWNESADSRAAGRHKSHEDPRVVAAVRESVNYLVSQQNMLLIP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS67 VGVFHTEYGALNRVHVLWWNESADSRAAGRHKSHEDPRVVAAVRESVNYLVSQQNMLLIP 190 200 210 220 230 240 pF1KE6 TSFSPLK ::::::: CCDS67 TSFSPLK >>CCDS6761.1 NIPSNAP3B gene_id:55335|Hs108|chr9 (247 aa) initn: 1492 init1: 1492 opt: 1492 Z-score: 1976.0 bits: 373.1 E(32554): 9.6e-104 Smith-Waterman score: 1492; 87.0% identity (96.0% similar) in 247 aa overlap (1-247:1-247) 10 20 30 40 50 60 pF1KE6 MLVLRSALTRALASRTLAPQMCSSFATGPRQYDGIFYEFRSYYLKPSKMNEFLENFEKNA ::::::.::.::::::::::.::::::::::::: :::::.::::::.:: :.::..:: CCDS67 MLVLRSGLTKALASRTLAPQVCSSFATGPRQYDGTFYEFRTYYLKPSNMNAFMENLKKNI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 HLRTAHSELVGYWSVEFGGRMNTVFHIWKYDNFAHRTEVRKALAKDKEWQEQFLIPNLAL ::::..:::::.:::::::: : :::::::::::::.:::::::. :::::: .::::: CCDS67 HLRTSYSELVGFWSVEFGGRTNKVFHIWKYDNFAHRAEVRKALANCKEWQEQSIIPNLAR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 IDKQESEITYLVPWCKLEKPPKEGVYELATFQMKPGGPALWGDAFKRAVHAHVNLGYTKL :::::.:::::.:: ::::::::::::::.:::::::::::::::.::..:::::::::. CCDS67 IDKQETEITYLIPWSKLEKPPKEGVYELAVFQMKPGGPALWGDAFERAINAHVNLGYTKV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 VGVFHTEYGALNRVHVLWWNESADSRAAGRHKSHEDPRVVAAVRESVNYLVSQQNMLLIP ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: CCDS67 VGVFHTEYGELNRVHVLWWNESADSRAAGRHKSHEDPRVVAAVRESVNYLVSQQNMLLIP 190 200 210 220 230 240 pF1KE6 TSFSPLK .:::::: CCDS67 ASFSPLK >>CCDS5521.1 GBAS gene_id:2631|Hs108|chr7 (286 aa) initn: 204 init1: 131 opt: 244 Z-score: 324.8 bits: 67.8 E(32554): 9e-12 Smith-Waterman score: 244; 24.5% identity (54.6% similar) in 249 aa overlap (10-247:47-286) 10 20 30 pF1KE6 MLVLRSALTRALASRTLAPQMCSSFATGPRQYDGIFYEF ..: : . :. . .. . .:.. CCDS55 LLQRAAPCSLLPRLRTWTSSSNRSREDSWLKSLFVRKVDPRKDAHSNLLAKKETSNLYKL 20 30 40 50 60 70 40 50 60 70 80 90 pF1KE6 RSYYLKPSKMNEFLENFEKNAH--LRTAHSE------LVGYWSVEFGGRMNTVFHIWKYD . . .:: : :: ..: . : : . ::: :.. .: ... . :.:.:. CCDS55 QFHNVKP----ECLEAYNKICQEVLPKIHEDKHYPCTLVGTWNTWYG-EQDQAVHLWRYE 80 90 100 110 120 130 100 110 120 130 140 pF1KE6 N-FAHRTEVRKALAKDKEWQEQFLIPNLALIDKQESEITYLVPWCKLEKPPKEG--VYEL . . ::: . : ..::. : . :...... . . : : :. : .::: CCDS55 GGYPALTEVMNKLRENKEFLEFRKARSDMLLSRKNQLLLEFSFWN--EPVPRSGPNIYEL 140 150 160 170 180 150 160 170 180 190 200 pF1KE6 ATFQMKPGGPALWGDAFKRAVHAHVNLGYTKLVGVFHTEYGALNRVHVLWWNESADSRAA ..:..:: ::. . ::.. . . : .. :: : .. : : :: :: .. ..: CCDS55 RSYQLRPGTMIEWGNYWARAIRFRQD-G-NEAVGGFFSQIGQLYMVHHLWAYRDLQTRED 190 200 210 220 230 240 210 220 230 240 pF1KE6 GRHKSHEDPRVVAAVRESVNYLVSQQNMLLIPTSFSPLK :. . . : .: . ... ..:: . :::. CCDS55 IRNAAWHKHGWEELVYYTVPLIQEMESRIMIPLKTSPLQ 250 260 270 280 >>CCDS13860.1 NIPSNAP1 gene_id:8508|Hs108|chr22 (284 aa) initn: 192 init1: 93 opt: 233 Z-score: 310.3 bits: 65.1 E(32554): 5.8e-11 Smith-Waterman score: 233; 22.9% identity (53.9% similar) in 245 aa overlap (10-247:45-284) 10 20 30 pF1KE6 MLVLRSALTRALASRTLAPQMCSSFATGPRQYDGIFYEF :.: . . :. . . .. . .:.. CCDS13 LLGGPGPRAGDVASAAAARFYSKDNEGSWFRSLFVHKVDPRKDAHSTLLSKKETSNLYKI 20 30 40 50 60 70 40 50 60 70 80 90 pF1KE6 RSYYLKPSKM---NEFLENFEKNAHLRTAHS-ELVGYWSVEFGGRMNTVFHIWKYDN-FA . . .:: . : . : . :: . ::: :.. .: ... . :.:.... . CCDS13 QFHNVKPEYLDAYNSLTEAVLPKLHLDEDYPCSLVGNWNTWYG-EQDQAVHLWRFSGGYP 80 90 100 110 120 130 100 110 120 130 140 150 pF1KE6 HRTEVRKALAKDKEWQEQFLIPNLALIDKQESEITYLVPWCKLEKPPKEG--VYELATFQ . . : ..::. : . :...... . . : : :. : .::: :.. CCDS13 ALMDCMNKLKNNKEYLEFRRERSQMLLSRRNQLLLEFSFWN--EPQPRMGPNIYELRTYK 140 150 160 170 180 190 160 170 180 190 200 210 pF1KE6 MKPGGPALWGDAFKRAVHAHVNLGYTKLVGVFHTEYGALNRVHVLWWNESADSRAAGRHK .::: ::. . ::.. . . . :: : .. : : :: :: .. .:: :. CCDS13 LKPGTMIEWGNNWARAIKYRQE--NQEAVGGFFSQIGELYVVHHLWAYKDLQSREETRNA 200 210 220 230 240 220 230 240 pF1KE6 SHEDPRVVAAVRESVNYLVSQQNMLLIPTSFSPLK . . : .: . ... ..:: ..:::. CCDS13 AWRKRGWDENVYYTVPLVRHMESRIMIPLKISPLQ 250 260 270 280 247 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:58:41 2016 done: Tue Nov 8 14:58:41 2016 Total Scan time: 1.670 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]