Result of FASTA (ccds) for
pFN21AE6373
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6373, 337 aa
1>>>pF1KE6373 337 - 337 aa - 337 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8021+/-0.00097; mu= 18.7165+/- 0.058
mean_var=63.6828+/-13.371, 0's: 0 Z-trim(104.7): 24 B-trim: 526 in 1/48
Lambda= 0.160718
statistics sampled from 7993 (8014) to 7993 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.6), E-opt: 0.2 (0.246), width: 16
Scan time: 1.960
The best scores are: opt bits E(32554)
CCDS6717.1 SLC35D2 gene_id:11046|Hs108|chr9 ( 337) 2155 508.5 3.1e-144
CCDS636.1 SLC35D1 gene_id:23169|Hs108|chr1 ( 355) 1236 295.4 4.5e-80
CCDS69625.1 SLC35D2 gene_id:11046|Hs108|chr9 ( 249) 1029 247.3 9.7e-66
CCDS34544.1 SLC35D3 gene_id:340146|Hs108|chr6 ( 416) 286 75.2 1e-13
>>CCDS6717.1 SLC35D2 gene_id:11046|Hs108|chr9 (337 aa)
initn: 2155 init1: 2155 opt: 2155 Z-score: 2702.9 bits: 508.5 E(32554): 3.1e-144
Smith-Waterman score: 2155; 100.0% identity (100.0% similar) in 337 aa overlap (1-337:1-337)
10 20 30 40 50 60
pF1KE6 MTAGGQAEAEGAGGEPGAARLPSRVARLLSALFYGTCSFLIVLVNKALLTTYGFPSPIFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 MTAGGQAEAEGAGGEPGAARLPSRVARLLSALFYGTCSFLIVLVNKALLTTYGFPSPIFL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 GIGQMAATIMILYVSKLNKIIHFPDFDKKIPVKLFPLPLLYVGNHISGLSSTSKLSLPMF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 GIGQMAATIMILYVSKLNKIIHFPDFDKKIPVKLFPLPLLYVGNHISGLSSTSKLSLPMF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 TVLRKFTIPLTLLLETIILGKQYSLNIILSVFAIILGAFIAAGSDLAFNLEGYIFVFLND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 TVLRKFTIPLTLLLETIILGKQYSLNIILSVFAIILGAFIAAGSDLAFNLEGYIFVFLND
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 IFTAANGVYTKQKMDPKELGKYGVLFYNACFMIIPTLIISVSTGDLQQATEFNQWKNVVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 IFTAANGVYTKQKMDPKELGKYGVLFYNACFMIIPTLIISVSTGDLQQATEFNQWKNVVF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 ILQFLLSCFLGFLLMYSTVLCSYYNSALTTAVVGAIKNVSVAYIGILIGGDYIFSLLNFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 ILQFLLSCFLGFLLMYSTVLCSYYNSALTTAVVGAIKNVSVAYIGILIGGDYIFSLLNFV
250 260 270 280 290 300
310 320 330
pF1KE6 GLNICMAGGLRYSFLTLSSQLKPKPVGEENICLDLKS
:::::::::::::::::::::::::::::::::::::
CCDS67 GLNICMAGGLRYSFLTLSSQLKPKPVGEENICLDLKS
310 320 330
>>CCDS636.1 SLC35D1 gene_id:23169|Hs108|chr1 (355 aa)
initn: 1219 init1: 1219 opt: 1236 Z-score: 1551.0 bits: 295.4 E(32554): 4.5e-80
Smith-Waterman score: 1236; 57.7% identity (85.2% similar) in 310 aa overlap (27-336:42-350)
10 20 30 40 50
pF1KE6 MTAGGQAEAEGAGGEPGAARLPSRVARLLSALFYGTCSFLIVLVNKALLTTYGFPS
.::.: :::. :::::.:::..::.: :::
CCDS63 VKGEAPAKSSTLRDEEELGMASAETLTVFLKLLAAGFYGVSSFLIVVVNKSVLTNYRFPS
20 30 40 50 60 70
60 70 80 90 100 110
pF1KE6 PIFLGIGQMAATIMILYVSKLNKIIHFPDFDKKIPVKLFPLPLLYVGNHISGLSSTSKLS
. .:.:::.::. .:.:.: ....:::.:...: : ::::::: ::.:.:: ::.::.
CCDS63 SLCVGLGQMVATVAVLWVGKALRVVKFPDLDRNVPRKTFPLPLLYFGNQITGLFSTKKLN
80 90 100 110 120 130
120 130 140 150 160 170
pF1KE6 LPMFTVLRKFTIPLTLLLETIILGKQYSLNIILSVFAIILGAFIAAGSDLAFNLEGYIFV
::::::::.:.: .:.. : ..: : .: .: ..:::.:.:::.::.:::::.:::: :.
CCDS63 LPMFTVLRRFSILFTMFAEGVLLKKTFSWGIKMTVFAMIIGAFVAASSDLAFDLEGYAFI
140 150 160 170 180 190
180 190 200 210 220 230
pF1KE6 FLNDIFTAANGVYTKQKMDPKELGKYGVLFYNACFMIIPTLIISVSTGDLQQATEFNQWK
..::..:::::.:.:::.: :::::::.:.::: :::.::: :. ::: :.:.::. :
CCDS63 LINDVLTAANGAYVKQKLDSKELGKYGLLYYNALFMILPTLAIAYFTGDAQKAVEFEGWA
200 210 220 230 240 250
240 250 260 270 280 290
pF1KE6 NVVFILQFLLSCFLGFLLMYSTVLCSYYNSALTTAVVGAIKNVSVAYIGILIGGDYIFSL
...:.::: ::: .::.:::.::::. :::::::..:: :::. ..:::...::::::.
CCDS63 DTLFLLQFTLSCVMGFILMYATVLCTQYNSALTTTIVGCIKNILITYIGMVFGGDYIFTW
260 270 280 290 300 310
300 310 320 330
pF1KE6 LNFVGLNICMAGGLRYSFLTLSSQLKPKPVGEENICLDLKS
::.:::: .::.: ::..:.. . : .: : ::.:
CCDS63 TNFIGLNISIAGSLVYSYITFTEEQLSKQ-SEANNKLDIKGKGAV
320 330 340 350
>>CCDS69625.1 SLC35D2 gene_id:11046|Hs108|chr9 (249 aa)
initn: 1043 init1: 1025 opt: 1029 Z-score: 1293.7 bits: 247.3 E(32554): 9.7e-66
Smith-Waterman score: 1387; 73.9% identity (73.9% similar) in 337 aa overlap (1-337:1-249)
10 20 30 40 50 60
pF1KE6 MTAGGQAEAEGAGGEPGAARLPSRVARLLSALFYGTCSFLIVLVNKALLTTYGFPSPIFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MTAGGQAEAEGAGGEPGAARLPSRVARLLSALFYGTCSFLIVLVNKALLTTYGFPSPIFL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 GIGQMAATIMILYVSKLNKIIHFPDFDKKIPVKLFPLPLLYVGNHISGLSSTSKLSLPMF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 GIGQMAATIMILYVSKLNKIIHFPDFDKKIPVKLFPLPLLYVGNHISGLSSTSKLSLPMF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 TVLRKFTIPLTLLLETIILGKQYSLNIILSVFAIILGAFIAAGSDLAFNLEGYIFVFLND
:::::::::::::::::::::::::::::::::::::::::::
CCDS69 TVLRKFTIPLTLLLETIILGKQYSLNIILSVFAIILGAFIAAG-----------------
130 140 150 160
190 200 210 220 230 240
pF1KE6 IFTAANGVYTKQKMDPKELGKYGVLFYNACFMIIPTLIISVSTGDLQQATEFNQWKNVVF
CCDS69 ------------------------------------------------------------
250 260 270 280 290 300
pF1KE6 ILQFLLSCFLGFLLMYSTVLCSYYNSALTTAVVGAIKNVSVAYIGILIGGDYIFSLLNFV
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 -----------FLLMYSTVLCSYYNSALTTAVVGAIKNVSVAYIGILIGGDYIFSLLNFV
170 180 190 200 210
310 320 330
pF1KE6 GLNICMAGGLRYSFLTLSSQLKPKPVGEENICLDLKS
:::::::::::::::::::::::::::::::::::::
CCDS69 GLNICMAGGLRYSFLTLSSQLKPKPVGEENICLDLKS
220 230 240
>>CCDS34544.1 SLC35D3 gene_id:340146|Hs108|chr6 (416 aa)
initn: 230 init1: 180 opt: 286 Z-score: 359.6 bits: 75.2 E(32554): 1e-13
Smith-Waterman score: 286; 25.3% identity (54.7% similar) in 320 aa overlap (24-329:8-322)
10 20 30 40 50 60
pF1KE6 MTAGGQAEAEGAGGEPGAARLPSRVARLLSALFYGTCSFLIVLVNKALLTTYGFPSPIFL
:: . :. .:. : . .. : :.. : : ::
CCDS34 MRQLCRGRVLGISVAIAHGVFSGSLNILLKFLISRYQFS---FL
10 20 30 40
70 80 90 100 110
pF1KE6 GIGQ-MAATIMILYVSKLNKI--IHFPDFDKKIPVKLFPLPLLYVGNHISGLSSTSKLSL
. : .... : . : .. : : : .. .. . .: . . : : :::
CCDS34 TLVQCLTSSTAALSLELLRRLGLIAVPPFGLSLARSFAGVAVLSTLQSSLTLWSLRGLSL
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE6 PMFTVLRKFTIPLTLLLETIILGKQY--SLNIILSVFAIILGAFIAAGSDLAFNLEGYIF
::..:... .::. .: ... :. : ... .:. :: .:...::. . ::.
CCDS34 PMYVVFKR-CLPLVTMLIGVLVLKNGAPSPGVLAAVLITTCGAALAGAGDLTGDPIGYVT
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE6 VFLNDIFTAANGVYTKQKMDPKELGKYGVLFYNACFMIIPTLII-SVSTGDLQQATEFNQ
: . :: : .. : : . . : : :.: : .. : .: :
CCDS34 GVLAVLVHAAYLVLIQKASADTEHGPLTAQYVIAV-SATPLLVICSFASTDSIHAWTFPG
170 180 190 200 210
240 250 260 270 280 290
pF1KE6 WKNVVFILQFLLSCFLGFLLMYSTVLCSYYNSALTTAVVGAIKNVSVAYIGILIGGDYIF
::. ... :. ..: . ..:. :.: :::.::. ::..:.... .:.. .:
CCDS34 WKDPAMVCIFVACILIGCAMNFTTLHCTYINSAVTTSFVGVVKSIATITVGMVAFSDVEP
220 230 240 250 260 270
300 310 320 330
pF1KE6 SLLNFVGLNICMAGGLRY---SFLTLSSQ-----LKPKPVGEENICLDLKS
. : ..:. . :.. : .:. .: :. .: :::
CCDS34 TSLFIAGVVVNTLGSIIYCVAKFMETRKQSNYEDLEAQPRGEEAQLSGDQLPFVMEELPG
280 290 300 310 320 330
CCDS34 EGGNGRSEGGEAAGGPAQESRQEVRGSPRGVPLVAGSSEEGSRRSLKDAYLEVWRLVRGT
340 350 360 370 380 390
337 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 12:41:35 2016 done: Tue Nov 8 12:41:35 2016
Total Scan time: 1.960 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]