FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6554, 152 aa 1>>>pF1KE6554 152 - 152 aa - 152 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3745+/-0.00028; mu= 12.5945+/- 0.018 mean_var=64.9762+/-13.347, 0's: 0 Z-trim(120.0): 22 B-trim: 566 in 1/52 Lambda= 0.159110 statistics sampled from 34692 (34714) to 34692 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.765), E-opt: 0.2 (0.407), width: 16 Scan time: 4.170 The best scores are: opt bits E(85289) NP_004139 (OMIM: 602062) ninjurin-1 [Homo sapiens] ( 152) 993 235.5 2.6e-62 XP_011517018 (OMIM: 602062) PREDICTED: ninjurin-1 ( 102) 632 152.5 1.6e-37 NP_001281274 (OMIM: 607297) ninjurin-2 isoform 2 [ ( 135) 431 106.4 1.6e-23 NP_057617 (OMIM: 607297) ninjurin-2 isoform 1 [Hom ( 188) 431 106.5 2.1e-23 NP_001281275 (OMIM: 607297) ninjurin-2 isoform 3 [ ( 106) 333 83.9 7.6e-17 >>NP_004139 (OMIM: 602062) ninjurin-1 [Homo sapiens] (152 aa) initn: 993 init1: 993 opt: 993 Z-score: 1239.8 bits: 235.5 E(85289): 2.6e-62 Smith-Waterman score: 993; 100.0% identity (100.0% similar) in 152 aa overlap (1-152:1-152) 10 20 30 40 50 60 pF1KE6 MDSGTEEYELNGGLPPGTPGSPDASPARWGWRHGPINVNHYASKKSAAESMLDIALLMAN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MDSGTEEYELNGGLPPGTPGSPDASPARWGWRHGPINVNHYASKKSAAESMLDIALLMAN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 ASQLKAVVEQGPSFAFYVPLVVLISISLVLQIGVGVLLIFLVKYDLNNPAKHAKLDFLNN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 ASQLKAVVEQGPSFAFYVPLVVLISISLVLQIGVGVLLIFLVKYDLNNPAKHAKLDFLNN 70 80 90 100 110 120 130 140 150 pF1KE6 LATGLVFIIVVVNIFITAFGVQKPLMDMAPQQ :::::::::::::::::::::::::::::::: NP_004 LATGLVFIIVVVNIFITAFGVQKPLMDMAPQQ 130 140 150 >>XP_011517018 (OMIM: 602062) PREDICTED: ninjurin-1 isof (102 aa) initn: 632 init1: 632 opt: 632 Z-score: 794.6 bits: 152.5 E(85289): 1.6e-37 Smith-Waterman score: 632; 100.0% identity (100.0% similar) in 102 aa overlap (51-152:1-102) 30 40 50 60 70 80 pF1KE6 SPDASPARWGWRHGPINVNHYASKKSAAESMLDIALLMANASQLKAVVEQGPSFAFYVPL :::::::::::::::::::::::::::::: XP_011 MLDIALLMANASQLKAVVEQGPSFAFYVPL 10 20 30 90 100 110 120 130 140 pF1KE6 VVLISISLVLQIGVGVLLIFLVKYDLNNPAKHAKLDFLNNLATGLVFIIVVVNIFITAFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 VVLISISLVLQIGVGVLLIFLVKYDLNNPAKHAKLDFLNNLATGLVFIIVVVNIFITAFG 40 50 60 70 80 90 150 pF1KE6 VQKPLMDMAPQQ :::::::::::: XP_011 VQKPLMDMAPQQ 100 >>NP_001281274 (OMIM: 607297) ninjurin-2 isoform 2 [Homo (135 aa) initn: 455 init1: 421 opt: 431 Z-score: 543.4 bits: 106.4 E(85289): 1.6e-23 Smith-Waterman score: 431; 57.6% identity (80.8% similar) in 125 aa overlap (19-143:5-122) 10 20 30 40 50 60 pF1KE6 MDSGTEEYELNGGLPPGTPGSPDASPARWGWRHGPINVNHYASKKSAAESMLDIALLMAN ::: : : : :::.::::.:::.::::::.::.:.: NP_001 MMYMPGSSD--P-----RSQPINLNHYATKKSVAESMLDVALFMSN 10 20 30 70 80 90 100 110 120 pF1KE6 ASQLKAVVEQGPSFAFYVPLVVLISISLVLQIGVGVLLIFLVKYDLNNPAKHAKLDFLNN : .::::.::::: .:. ::.:::.::.::. .::::. ... .::. :. .:. ::: NP_001 AMRLKAVLEQGPSSHYYTTLVTLISLSLLLQVVIGVLLVVIARLNLNEVEKQWRLNQLNN 40 50 60 70 80 90 130 140 150 pF1KE6 LATGLVFIIVVVNIFITAFGVQKPLMDMAPQQ :: :::. ::.:.::::::..: NP_001 AATILVFFTVVINVFITAFGAHKTGFLAARASRNPL 100 110 120 130 >>NP_057617 (OMIM: 607297) ninjurin-2 isoform 1 [Homo sa (188 aa) initn: 455 init1: 421 opt: 431 Z-score: 541.2 bits: 106.5 E(85289): 2.1e-23 Smith-Waterman score: 432; 53.1% identity (76.9% similar) in 143 aa overlap (1-143:47-175) 10 20 30 pF1KE6 MDSGTEEYELNGGLPPGTPGSPDASPARWG :.:. :. .:. ::: : : NP_057 AAETQTAEPGGAHAVCSRHPVRVKGLEGSEMESARENIDLQ-------PGSSD--P---- 20 30 40 50 60 40 50 60 70 80 90 pF1KE6 WRHGPINVNHYASKKSAAESMLDIALLMANASQLKAVVEQGPSFAFYVPLVVLISISLVL : :::.::::.:::.::::::.::.:.:: .::::.::::: .:. ::.:::.::.: NP_057 -RSQPINLNHYATKKSVAESMLDVALFMSNAMRLKAVLEQGPSSHYYTTLVTLISLSLLL 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE6 QIGVGVLLIFLVKYDLNNPAKHAKLDFLNNLATGLVFIIVVVNIFITAFGVQKPLMDMAP :. .::::. ... .::. :. .:. ::: :: :::. ::.:.::::::..: NP_057 QVVIGVLLVVIARLNLNEVEKQWRLNQLNNAATILVFFTVVINVFITAFGAHKTGFLAAR 130 140 150 160 170 180 pF1KE6 QQ NP_057 ASRNPL >>NP_001281275 (OMIM: 607297) ninjurin-2 isoform 3 [Homo (106 aa) initn: 351 init1: 333 opt: 333 Z-score: 423.4 bits: 83.9 E(85289): 7.6e-17 Smith-Waterman score: 333; 57.0% identity (84.9% similar) in 93 aa overlap (51-143:1-93) 30 40 50 60 70 80 pF1KE6 SPDASPARWGWRHGPINVNHYASKKSAAESMLDIALLMANASQLKAVVEQGPSFAFYVPL :::.::.:.:: .::::.::::: .:. : NP_001 MLDVALFMSNAMRLKAVLEQGPSSHYYTTL 10 20 30 90 100 110 120 130 140 pF1KE6 VVLISISLVLQIGVGVLLIFLVKYDLNNPAKHAKLDFLNNLATGLVFIIVVVNIFITAFG :.:::.::.::. .::::. ... .::. :. .:. ::: :: :::. ::.:.:::::: NP_001 VTLISLSLLLQVVIGVLLVVIARLNLNEVEKQWRLNQLNNAATILVFFTVVINVFITAFG 40 50 60 70 80 90 150 pF1KE6 VQKPLMDMAPQQ ..: NP_001 AHKTGFLAARASRNPL 100 152 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:22:02 2016 done: Tue Nov 8 14:22:02 2016 Total Scan time: 4.170 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]